15 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kctd10	Potassium channel tetramerization domain containing 10. (311 aa)
	myoc	Myocilin. (482 aa)
	ENSPREP00000001578	PL48 domain-containing protein. (371 aa)
	LOC103478985	Olfactomedin-like domain-containing protein. (500 aa)
	scai	Suppressor of cancer cell invasion. (543 aa)
	ripor1	RHO family interacting cell polarization regulator 1. (1094 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1067 aa)
	flcn	Folliculin. (554 aa)
	LOC103469022	Uncharacterized protein; Belongs to the integrin alpha chain family. (900 aa)
	tnfaip1	Tumor necrosis factor, alpha-induced protein 1 (endothelial). (324 aa)
	kctd13	Potassium channel tetramerization domain containing 13. (339 aa)
	LOC103479391	CULLIN_2 domain-containing protein; Belongs to the cullin family. (766 aa)
	LOC103474461	Cullin 3; Belongs to the cullin family. (767 aa)
	ripor3	RIPOR family member 3. (1001 aa)
	LOC103481979	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1089 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103474461	LOC103479391	ENSPREP00000027846	ENSPREP00000024968	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.900
LOC103474461	kctd10	ENSPREP00000027846	ENSPREP00000033173	Cullin 3; Belongs to the cullin family.	Potassium channel tetramerization domain containing 10.	0.569
LOC103474461	kctd13	ENSPREP00000027846	ENSPREP00000024659	Cullin 3; Belongs to the cullin family.	Potassium channel tetramerization domain containing 13.	0.495
LOC103474461	tnfaip1	ENSPREP00000027846	ENSPREP00000023380	Cullin 3; Belongs to the cullin family.	Tumor necrosis factor, alpha-induced protein 1 (endothelial).	0.519
LOC103479391	LOC103474461	ENSPREP00000024968	ENSPREP00000027846	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.900
LOC103479391	kctd10	ENSPREP00000024968	ENSPREP00000033173	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Potassium channel tetramerization domain containing 10.	0.569
LOC103479391	kctd13	ENSPREP00000024968	ENSPREP00000024659	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Potassium channel tetramerization domain containing 13.	0.495
LOC103479391	tnfaip1	ENSPREP00000024968	ENSPREP00000023380	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Tumor necrosis factor, alpha-induced protein 1 (endothelial).	0.519
kctd10	LOC103474461	ENSPREP00000033173	ENSPREP00000027846	Potassium channel tetramerization domain containing 10.	Cullin 3; Belongs to the cullin family.	0.569
kctd10	LOC103479391	ENSPREP00000033173	ENSPREP00000024968	Potassium channel tetramerization domain containing 10.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.569
kctd13	LOC103474461	ENSPREP00000024659	ENSPREP00000027846	Potassium channel tetramerization domain containing 13.	Cullin 3; Belongs to the cullin family.	0.495
kctd13	LOC103479391	ENSPREP00000024659	ENSPREP00000024968	Potassium channel tetramerization domain containing 13.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.495
tnfaip1	LOC103474461	ENSPREP00000023380	ENSPREP00000027846	Tumor necrosis factor, alpha-induced protein 1 (endothelial).	Cullin 3; Belongs to the cullin family.	0.519
tnfaip1	LOC103479391	ENSPREP00000023380	ENSPREP00000024968	Tumor necrosis factor, alpha-induced protein 1 (endothelial).	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.519