(61 nodes) Photoreceptor cell development network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000015938	Nephronophthisis 4. (230 aa)
	nphp4	Uncharacterized protein. (1207 aa)
	rorb	RAR-related orphan receptor B. (479 aa)
	prph2	Peripherin 2a (retinal degeneration, slow). (344 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (427 aa)
	LOC103480354	Vang-like protein. (525 aa)
	rp1l1	Rp1 like 1a. (2396 aa)
	mfrp	Membrane frizzled-related protein. (673 aa)
	ENSPREP00000010317	Uncharacterized protein. (390 aa)
	ENSPREP00000009710	Uncharacterized protein. (2328 aa)
	ENSPREP00000020228	Thyroid hormone receptor beta. (482 aa)
	LOC103480551	RPGR interacting protein 1. (1005 aa)
	ENSPREP00000021903	Uncharacterized protein. (192 aa)
	TBX2	T-box transcription factor 2. (686 aa)
	ENSPREP00000022685	Abelson helper integration site 1. (907 aa)
	rom1	Retinal outer segment membrane protein 1b. (361 aa)
	ENSPREP00000024139	RP1 axonemal microtubule associated. (235 aa)
	med27	Mediator complex subunit 27. (318 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (370 aa)
	bhlhe23	Basic helix-loop-helix family, member e23. (227 aa)
	clg16h8orf37	Uncharacterized protein. (154 aa)
	ttc26	Tetratricopeptide repeat domain 26. (533 aa)
	ift140	Intraflagellar transport 140 homolog (Chlamydomonas). (1435 aa)
	ENSPREP00000028127	Doublecortin domain-containing protein. (4436 aa)
	prdm1	PR domain containing 1a, with ZNF domain. (876 aa)
	ush1c	Usher syndrome 1C. (553 aa)
	med24	Mediator complex subunit 24. (989 aa)
	rpgrip1l	RPGRIP1 like. (1044 aa)
	LOC103458000	Uncharacterized protein. (900 aa)
	ift57	Intraflagellar transport 57 homolog (Chlamydomonas). (350 aa)
	med29	Mediator complex subunit 29. (185 aa)
	ENSPREP00000033286	Uncharacterized protein. (373 aa)
	ENSPREP00000033301	Uncharacterized protein. (756 aa)
	Eys	Uncharacterized protein. (303 aa)
	dcx	Uncharacterized protein. (359 aa)
	bbs4	Bardet-Biedl syndrome 4. (520 aa)
	arl13b	ADP-ribosylation factor-like 13b. (405 aa)
	ENSPREP00000008873	PR/SET domain 1. (783 aa)
	ENSPREP00000008634	Uncharacterized protein. (690 aa)
	adgrv1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6188 aa)
	dzank1	Double zinc ribbon and ankyrin repeat domains 1. (610 aa)
	pcare	Uncharacterized protein. (1131 aa)
	neurod1	Neurogenic differentiation factor. (353 aa)
	kiaa0586	Uncharacterized protein. (1405 aa)
	rtn4ip1	Reticulon 4 interacting protein 1. (413 aa)
	naglu	N-acetylglucosaminidase, alpha. (796 aa)
	bbs5	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (343 aa)
	cep290	Centrosomal protein 290. (2041 aa)
	kif7	Kinesin family member 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1347 aa)
	ENSPREP00000001881	T-box transcription factor 2a. (572 aa)
	llgl2	LLGL scribble cell polarity complex component 2. (1006 aa)
	bbs1	Bardet-Biedl syndrome 1. (583 aa)
	VANGL2	VANGL planar cell polarity protein 2. (691 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (557 aa)
	LOC103477409	Peripherin 2b (retinal degeneration, slow). (344 aa)
	LOC103457115	Uncharacterized protein. (356 aa)
	LOC103473166	Uncharacterized protein. (1465 aa)
	crb2	Crumbs cell polarity complex component 2b. (1343 aa)
	LOC103463303	Crumbs cell polarity complex component 1. (1334 aa)
	LOC103473100	PR domain containing 1b, with ZNF domain. (758 aa)
	LOC103458995	Peripherin 2-like a. (366 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008634	ENSPREP00000033301	ENSPREP00000008634	ENSPREP00000033301	Uncharacterized protein.	Uncharacterized protein.	0.647
ENSPREP00000010317	ENSPREP00000022685	ENSPREP00000010317	ENSPREP00000022685	Uncharacterized protein.	Abelson helper integration site 1.	0.498
ENSPREP00000010317	LOC103480551	ENSPREP00000010317	ENSPREP00000021389	Uncharacterized protein.	RPGR interacting protein 1.	0.456
ENSPREP00000010317	arl13b	ENSPREP00000010317	ENSPREP00000009259	Uncharacterized protein.	ADP-ribosylation factor-like 13b.	0.460
ENSPREP00000010317	bbs1	ENSPREP00000010317	ENSPREP00000001676	Uncharacterized protein.	Bardet-Biedl syndrome 1.	0.453
ENSPREP00000010317	bbs4	ENSPREP00000010317	ENSPREP00000009421	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.460
ENSPREP00000010317	rpgrip1l	ENSPREP00000010317	ENSPREP00000030453	Uncharacterized protein.	RPGRIP1 like.	0.528
ENSPREP00000015938	ENSPREP00000022685	ENSPREP00000015938	ENSPREP00000022685	Nephronophthisis 4.	Abelson helper integration site 1.	0.428
ENSPREP00000015938	LOC103480551	ENSPREP00000015938	ENSPREP00000021389	Nephronophthisis 4.	RPGR interacting protein 1.	0.796
ENSPREP00000015938	arl13b	ENSPREP00000015938	ENSPREP00000009259	Nephronophthisis 4.	ADP-ribosylation factor-like 13b.	0.441
ENSPREP00000015938	bbs1	ENSPREP00000015938	ENSPREP00000001676	Nephronophthisis 4.	Bardet-Biedl syndrome 1.	0.431
ENSPREP00000015938	ift140	ENSPREP00000015938	ENSPREP00000027530	Nephronophthisis 4.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.440
ENSPREP00000015938	nphp4	ENSPREP00000015938	ENSPREP00000015922	Nephronophthisis 4.	Uncharacterized protein.	0.899
ENSPREP00000015938	rpgrip1l	ENSPREP00000015938	ENSPREP00000030453	Nephronophthisis 4.	RPGRIP1 like.	0.919
ENSPREP00000021903	LOC103480551	ENSPREP00000021903	ENSPREP00000021389	Uncharacterized protein.	RPGR interacting protein 1.	0.400
ENSPREP00000021903	rom1	ENSPREP00000021903	ENSPREP00000023025	Uncharacterized protein.	Retinal outer segment membrane protein 1b.	0.494
ENSPREP00000022685	ENSPREP00000010317	ENSPREP00000022685	ENSPREP00000010317	Abelson helper integration site 1.	Uncharacterized protein.	0.498
ENSPREP00000022685	ENSPREP00000015938	ENSPREP00000022685	ENSPREP00000015938	Abelson helper integration site 1.	Nephronophthisis 4.	0.428
ENSPREP00000022685	LOC103480551	ENSPREP00000022685	ENSPREP00000021389	Abelson helper integration site 1.	RPGR interacting protein 1.	0.432
ENSPREP00000022685	arl13b	ENSPREP00000022685	ENSPREP00000009259	Abelson helper integration site 1.	ADP-ribosylation factor-like 13b.	0.550