(27 nodes) Actinin binding network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103473769	PDZ and LIM domain 5b. (591 aa)
	pdlim3	PDZ and LIM domain 3a. (315 aa)
	tmub1	Transmembrane and ubiquitin-like domain containing 1. (238 aa)
	pkd2	Polycystic kidney disease 2. (893 aa)
	pdlim1	PDZ and LIM domain 1 (elfin). (321 aa)
	LOC103477109	Polycystic kidney disease 2-like 1. (756 aa)
	myot	Myotilin. (462 aa)
	pdlim4	PDZ and LIM domain 4. (364 aa)
	pdlim7	PDZ and LIM domain 7. (488 aa)
	lmo7	LIM domain 7a. (1708 aa)
	LOC103470528	PDZ and LIM domain 2 (mystique). (367 aa)
	tmub2	Transmembrane and ubiquitin-like domain containing 2. (330 aa)
	LRRC10B	Leucine rich repeat containing 10B. (410 aa)
	LOC103464709	Cysteine and glycine-rich protein 1b. (192 aa)
	ENSPREP00000018298	Uncharacterized protein. (542 aa)
	nrap	Nebulin-related anchoring protein. (1797 aa)
	ENSPREP00000032344	Calponin-homology (CH) domain-containing protein. (166 aa)
	dag1	Dystroglycan 1. (893 aa)
	LOC103466188	Uncharacterized protein. (283 aa)
	csrp1	Cysteine and glycine-rich protein 1a. (221 aa)
	ENSPREP00000029288	PDZ and LIM domain 5a. (260 aa)
	ENSPREP00000029216	PDZ and LIM domain 5a. (344 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (193 aa)
	magi1	Membrane associated guanylate kinase, WW and PDZ domain containing 1b. (1691 aa)
	ENSPREP00000025758	Peptidase S72 domain-containing protein. (799 aa)
	LOC103467539	Membrane associated guanylate kinase, WW and PDZ domain containing 1a. (1234 aa)
	csrp2	Cysteine and glycine-rich protein 2. (193 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000018298	csrp3	ENSPREP00000018298	ENSPREP00000028608	Uncharacterized protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.434
ENSPREP00000018298	myot	ENSPREP00000018298	ENSPREP00000004461	Uncharacterized protein.	Myotilin.	0.601
ENSPREP00000025758	dag1	ENSPREP00000025758	ENSPREP00000031725	Peptidase S72 domain-containing protein.	Dystroglycan 1.	0.901
ENSPREP00000029216	ENSPREP00000029288	ENSPREP00000029216	ENSPREP00000029288	PDZ and LIM domain 5a.	PDZ and LIM domain 5a.	0.899
ENSPREP00000029288	ENSPREP00000029216	ENSPREP00000029288	ENSPREP00000029216	PDZ and LIM domain 5a.	PDZ and LIM domain 5a.	0.899
csrp3	ENSPREP00000018298	ENSPREP00000028608	ENSPREP00000018298	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Uncharacterized protein.	0.434
csrp3	myot	ENSPREP00000028608	ENSPREP00000004461	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Myotilin.	0.426
csrp3	nrap	ENSPREP00000028608	ENSPREP00000033274	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Nebulin-related anchoring protein.	0.594
dag1	ENSPREP00000025758	ENSPREP00000031725	ENSPREP00000025758	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.901
myot	ENSPREP00000018298	ENSPREP00000004461	ENSPREP00000018298	Myotilin.	Uncharacterized protein.	0.601
myot	csrp3	ENSPREP00000004461	ENSPREP00000028608	Myotilin.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.426
myot	nrap	ENSPREP00000004461	ENSPREP00000033274	Myotilin.	Nebulin-related anchoring protein.	0.573
nrap	csrp3	ENSPREP00000033274	ENSPREP00000028608	Nebulin-related anchoring protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.594
nrap	myot	ENSPREP00000033274	ENSPREP00000004461	Nebulin-related anchoring protein.	Myotilin.	0.573
tmub1	tmub2	ENSPREP00000001883	ENSPREP00000014077	Transmembrane and ubiquitin-like domain containing 1.	Transmembrane and ubiquitin-like domain containing 2.	0.537
tmub2	tmub1	ENSPREP00000014077	ENSPREP00000001883	Transmembrane and ubiquitin-like domain containing 2.	Transmembrane and ubiquitin-like domain containing 1.	0.537