88 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALPK1	Alpha kinase 1. (1056 aa)
	lpar1	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family. (351 aa)
	tradd	Tnfrsf1a-associated via death domain. (271 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (600 aa)
	ENSPREP00000002275	DED domain-containing protein. (147 aa)
	LOC103478931	Uncharacterized protein; Belongs to the peptidase C14A family. (444 aa)
	ENSPREP00000002926	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (196 aa)
	ENSPREP00000002932	Si:ch211-15b10.6. (187 aa)
	Tifa	Si:ch211-15b10.6. (191 aa)
	LOC103469798	SCY domain-containing protein. (110 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1057 aa)
	LOC103477745	Tumor necrosis factor b (TNF superfamily, member 2). (249 aa)
	trim8	Tripartite motif containing 8b. (595 aa)
	ENSPREP00000005404	Inhibitor of nuclear factor kappa B kinase subunit epsilon. (426 aa)
	DHX15	DEAH-box helicase 15. (763 aa)
	LOC103475990	Ajuba LIM protein. (658 aa)
	tirap	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein. (231 aa)
	eda	Ectodysplasin A; Belongs to the tumor necrosis factor family. (369 aa)
	brd4	Bromodomain containing 4. (1560 aa)
	ENSPREP00000007989	RanBP2-type domain-containing protein. (137 aa)
	Trim62	Tripartite motif containing 62, tandem duplicate 1. (278 aa)
	LOC103459939	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (507 aa)
	cth	Cystathionase (cystathionine gamma-lyase), like. (441 aa)
	terf2ip	BRCT domain-containing protein. (705 aa)
	LOC103469320	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (608 aa)
	htr2b	5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled. (466 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (582 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (996 aa)
	LOC103469200	G protein-coupled receptor, class C, group 5, member Ba. (397 aa)
	LOC103460775	Si:dkey-181m9.8. (732 aa)
	mtdh	Metadherin a. (519 aa)
	LOC103481612	ADP-ribosylation factor 2b. (786 aa)
	LOC103478059	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (669 aa)
	LOC103468661	Mitogen-activated protein kinase kinase kinase 14a. (869 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (506 aa)
	sharpin	SHANK-associated RH domain interacting protein. (436 aa)
	irak4	Interleukin-1 receptor-associated kinase 4. (477 aa)
	LOC103468264	Leucine rich adaptor protein 1. (356 aa)
	cflar	Uncharacterized protein; Belongs to the peptidase C14A family. (433 aa)
	tmem101	Transmembrane protein 101. (255 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (884 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	tnfrsf1a	Tumor necrosis factor receptor superfamily, member 1a. (333 aa)
	LOC103457742	Uncharacterized protein. (343 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	JMJD8	Jumonji domain containing 8. (261 aa)
	ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1. (740 aa)
	LOC103458422	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (289 aa)
	ENSPREP00000018072	Uncharacterized protein. (672 aa)
	ENSPREP00000018384	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (290 aa)
	ENSPREP00000018701	Ectodysplasin A receptor. (385 aa)
	ENSPREP00000020277	RBR-type E3 ubiquitin transferase. (158 aa)
	LOC103465308	Innate immunity activator b. (580 aa)
	abl1	Tyrosine-protein kinase. (1124 aa)
	ENSPREP00000021383	GUCT domain-containing protein. (129 aa)
	LOC103482437	Sharpin and rbck1 related. (698 aa)
	Tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (561 aa)
	LOC103479374	Mitochondrial E3 ubiquitin protein ligase 1a. (356 aa)
	trim32	Tripartite motif containing 32. (628 aa)
	LOC103478193	Uncharacterized protein. (433 aa)
	LOC103470783	CARD domain-containing protein. (434 aa)
	C18orf32	Chromosome 18 open reading frame 32. (87 aa)
	ENSPREP00000026492	SEFIR domain-containing protein. (109 aa)
	abl2	Tyrosine-protein kinase. (1187 aa)
	LURAP1L	Leucine rich adaptor protein 1 like. (205 aa)
	ENSPREP00000027430	CARD domain-containing protein. (524 aa)
	LOC103468544	Guanylate kinase-like domain-containing protein. (308 aa)
	LOC103473499	Coagulation factor II thrombin receptor; Belongs to the G-protein coupled receptor 1 family. (435 aa)
	tbk1	TANK-binding kinase 1. (703 aa)
	PRKCB	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (683 aa)
	LOC103472703	EF-hand domain-containing protein. (86 aa)
	tnfsf11	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (268 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (742 aa)
	traf3ip2	SEFIR domain-containing protein. (418 aa)
	LOC103476933	RING-type domain-containing protein. (561 aa)
	tnfrsf18	CD40 molecule, TNF receptor superfamily member 5. (314 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	LOC103457268	Si:ch211-108d22.2. (2793 aa)
	mul1	Mitochondrial E3 ubiquitin protein ligase 1b. (352 aa)
	s100b	S100 calcium binding protein, beta (neural); Belongs to the S-100 family. (94 aa)
	LOC103476976	Component of inhibitor of nuclear factor kappa B kinase complex. (689 aa)
	pink1	PTEN induced kinase 1. (575 aa)
	rnf31	Ring finger protein 31. (1109 aa)
	LOC103467293	Innate immunity activator a. (568 aa)
	PRKCA	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (688 aa)
	LOC103475011	Uncharacterized protein. (1473 aa)
	LOC103462977	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (666 aa)
	gprc5b	G protein-coupled receptor, class C, group 5, member Bb. (419 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALPK1	ENSPREP00000002932	ENSPREP00000000841	ENSPREP00000002932	Alpha kinase 1.	Si:ch211-15b10.6.	0.784
ALPK1	ENSPREP00000018384	ENSPREP00000000841	ENSPREP00000018384	Alpha kinase 1.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.511
ALPK1	Tifa	ENSPREP00000000841	ENSPREP00000002948	Alpha kinase 1.	Si:ch211-15b10.6.	0.784
ALPK1	map3k7	ENSPREP00000000841	ENSPREP00000002180	Alpha kinase 1.	Mitogen-activated protein kinase kinase kinase 7.	0.511
DHX15	ENSPREP00000021383	ENSPREP00000006773	ENSPREP00000021383	DEAH-box helicase 15.	GUCT domain-containing protein.	0.755
DHX15	ddx1	ENSPREP00000006773	ENSPREP00000017418	DEAH-box helicase 15.	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	0.699
ENSPREP00000002275	ENSPREP00000002926	ENSPREP00000002275	ENSPREP00000002926	DED domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.959
ENSPREP00000002275	ENSPREP00000005404	ENSPREP00000002275	ENSPREP00000005404	DED domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit epsilon.	0.405
ENSPREP00000002275	ENSPREP00000007989	ENSPREP00000002275	ENSPREP00000007989	DED domain-containing protein.	RanBP2-type domain-containing protein.	0.452
ENSPREP00000002275	ENSPREP00000018384	ENSPREP00000002275	ENSPREP00000018384	DED domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.635
ENSPREP00000002275	ENSPREP00000020277	ENSPREP00000002275	ENSPREP00000020277	DED domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.451
ENSPREP00000002275	LOC103458422	ENSPREP00000002275	ENSPREP00000017544	DED domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.951
ENSPREP00000002275	LOC103459939	ENSPREP00000002275	ENSPREP00000008346	DED domain-containing protein.	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.996
ENSPREP00000002275	LOC103476976	ENSPREP00000002275	ENSPREP00000032137	DED domain-containing protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.537
ENSPREP00000002275	LOC103478931	ENSPREP00000002275	ENSPREP00000002444	DED domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.997
ENSPREP00000002275	Tab3	ENSPREP00000002275	ENSPREP00000023271	DED domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.452
ENSPREP00000002275	cflar	ENSPREP00000002275	ENSPREP00000014960	DED domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.955
ENSPREP00000002275	ikbkb	ENSPREP00000002275	ENSPREP00000016563	DED domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.537
ENSPREP00000002275	map3k7	ENSPREP00000002275	ENSPREP00000002180	DED domain-containing protein.	Mitogen-activated protein kinase kinase kinase 7.	0.635
ENSPREP00000002275	myd88	ENSPREP00000002275	ENSPREP00000031341	DED domain-containing protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.965