(30 nodes) Regulation of myoblast differentiation network (Poecilia reticulata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ddit3	DNA-damage-inducible transcript 3. (309 aa)
	LOC103462560	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (319 aa)
	LOC103478593	RNA binding motif protein 24b. (238 aa)
	ankrd1	Ankyrin repeat domain 1a (cardiac muscle). (302 aa)
	LOC103466877	Mitogen-activated protein kinase. (364 aa)
	LOC103464907	Mitogen-activated protein kinase. (363 aa)
	sra1	Uncharacterized protein. (273 aa)
	myog	Myogenin. (246 aa)
	IGFBP3	Insulin like growth factor binding protein 3. (285 aa)
	akirin1	Akirin 1. (186 aa)
	trip4	Thyroid hormone receptor interactor 4. (573 aa)
	flot2	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (434 aa)
	LOC103472384	RNA binding motif protein 24a. (242 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1067 aa)
	tmem182	Transmembrane protein 182a. (246 aa)
	cxcl14	Chemokine (C-X-C motif) ligand 14. (99 aa)
	gdf11	Growth differentiation factor 11. (388 aa)
	LOC103470120	SET and MYND domain containing 1b. (489 aa)
	IL18	Uncharacterized protein. (218 aa)
	cdon	Cell adhesion associated, oncogene regulated. (1100 aa)
	LOC103473596	Transmembrane protein 182b. (260 aa)
	LOC103475119	Transforming growth factor beta; Belongs to the TGF-beta family. (380 aa)
	LOC103462938	Myogenic factor. (271 aa)
	boc	BOC cell adhesion associated, oncogene regulated. (1041 aa)
	LOC103458857	Inhibitor of DNA binding 3. (116 aa)
	LOC103475233	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)
	sostdc1	Sclerostin domain containing 1a. (219 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (401 aa)
	ripor3	RIPOR family member 3. (1001 aa)
	LOC103467285	Mitogen-activated protein kinase. (347 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103462938	myog	ENSPREP00000027285	ENSPREP00000004821	Myogenic factor.	Myogenin.	0.546
LOC103464907	ddit3	ENSPREP00000003478	ENSPREP00000012056	Mitogen-activated protein kinase.	DNA-damage-inducible transcript 3.	0.926
LOC103464907	myog	ENSPREP00000003478	ENSPREP00000004821	Mitogen-activated protein kinase.	Myogenin.	0.410
LOC103466877	ddit3	ENSPREP00000003114	ENSPREP00000012056	Mitogen-activated protein kinase.	DNA-damage-inducible transcript 3.	0.926
LOC103466877	myog	ENSPREP00000003114	ENSPREP00000004821	Mitogen-activated protein kinase.	Myogenin.	0.410
LOC103467285	ddit3	ENSPREP00000033561	ENSPREP00000012056	Mitogen-activated protein kinase.	DNA-damage-inducible transcript 3.	0.926
LOC103467285	myog	ENSPREP00000033561	ENSPREP00000004821	Mitogen-activated protein kinase.	Myogenin.	0.410
boc	cdon	ENSPREP00000028078	ENSPREP00000024005	BOC cell adhesion associated, oncogene regulated.	Cell adhesion associated, oncogene regulated.	0.900
cdon	boc	ENSPREP00000024005	ENSPREP00000028078	Cell adhesion associated, oncogene regulated.	BOC cell adhesion associated, oncogene regulated.	0.900
ddit3	LOC103464907	ENSPREP00000012056	ENSPREP00000003478	DNA-damage-inducible transcript 3.	Mitogen-activated protein kinase.	0.926
ddit3	LOC103466877	ENSPREP00000012056	ENSPREP00000003114	DNA-damage-inducible transcript 3.	Mitogen-activated protein kinase.	0.926
ddit3	LOC103467285	ENSPREP00000012056	ENSPREP00000033561	DNA-damage-inducible transcript 3.	Mitogen-activated protein kinase.	0.926
gdf11	myog	ENSPREP00000021002	ENSPREP00000004821	Growth differentiation factor 11.	Myogenin.	0.430
myog	LOC103462938	ENSPREP00000004821	ENSPREP00000027285	Myogenin.	Myogenic factor.	0.546
myog	LOC103464907	ENSPREP00000004821	ENSPREP00000003478	Myogenin.	Mitogen-activated protein kinase.	0.410
myog	LOC103466877	ENSPREP00000004821	ENSPREP00000003114	Myogenin.	Mitogen-activated protein kinase.	0.410
myog	LOC103467285	ENSPREP00000004821	ENSPREP00000033561	Myogenin.	Mitogen-activated protein kinase.	0.410
myog	gdf11	ENSPREP00000004821	ENSPREP00000021002	Myogenin.	Growth differentiation factor 11.	0.430