(13 nodes) Positive regulation of mRNA splicing, via spliceosome network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103472680	Cugbp, Elav-like family member 3a. (453 aa)
	nup98	Nucleoporin 98. (1820 aa)
	prpf19	Pre-mRNA processing factor 19. (458 aa)
	ENSPREP00000008610	RRM domain-containing protein. (275 aa)
	LOC103479097	Uncharacterized protein. (509 aa)
	tra2b	Transformer 2 beta homolog. (321 aa)
	rbmx	RNA binding motif protein X-linked. (383 aa)
	dazap1	DAZ associated protein 1. (387 aa)
	celf4	CUGBP, Elav-like family member 4. (523 aa)
	sf3b4	Splicing factor 3b, subunit 4. (403 aa)
	LOC103478727	Cugbp, Elav-like family member 3b. (405 aa)
	cirbp	Cold inducible RNA binding protein b. (212 aa)
	snw1	SNW domain containing 1. (536 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008610	LOC103479097	ENSPREP00000008610	ENSPREP00000010509	RRM domain-containing protein.	Uncharacterized protein.	0.542
ENSPREP00000008610	cirbp	ENSPREP00000008610	ENSPREP00000026681	RRM domain-containing protein.	Cold inducible RNA binding protein b.	0.586
ENSPREP00000008610	dazap1	ENSPREP00000008610	ENSPREP00000016353	RRM domain-containing protein.	DAZ associated protein 1.	0.449
ENSPREP00000008610	prpf19	ENSPREP00000008610	ENSPREP00000003500	RRM domain-containing protein.	Pre-mRNA processing factor 19.	0.427
ENSPREP00000008610	rbmx	ENSPREP00000008610	ENSPREP00000015240	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.636
ENSPREP00000008610	sf3b4	ENSPREP00000008610	ENSPREP00000016377	RRM domain-containing protein.	Splicing factor 3b, subunit 4.	0.628
LOC103479097	ENSPREP00000008610	ENSPREP00000010509	ENSPREP00000008610	Uncharacterized protein.	RRM domain-containing protein.	0.542
LOC103479097	cirbp	ENSPREP00000010509	ENSPREP00000026681	Uncharacterized protein.	Cold inducible RNA binding protein b.	0.610
LOC103479097	rbmx	ENSPREP00000010509	ENSPREP00000015240	Uncharacterized protein.	RNA binding motif protein X-linked.	0.612
LOC103479097	tra2b	ENSPREP00000010509	ENSPREP00000013873	Uncharacterized protein.	Transformer 2 beta homolog.	0.537
cirbp	ENSPREP00000008610	ENSPREP00000026681	ENSPREP00000008610	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.586
cirbp	LOC103479097	ENSPREP00000026681	ENSPREP00000010509	Cold inducible RNA binding protein b.	Uncharacterized protein.	0.610
cirbp	prpf19	ENSPREP00000026681	ENSPREP00000003500	Cold inducible RNA binding protein b.	Pre-mRNA processing factor 19.	0.438
cirbp	rbmx	ENSPREP00000026681	ENSPREP00000015240	Cold inducible RNA binding protein b.	RNA binding motif protein X-linked.	0.499
cirbp	sf3b4	ENSPREP00000026681	ENSPREP00000016377	Cold inducible RNA binding protein b.	Splicing factor 3b, subunit 4.	0.533
cirbp	tra2b	ENSPREP00000026681	ENSPREP00000013873	Cold inducible RNA binding protein b.	Transformer 2 beta homolog.	0.588
dazap1	ENSPREP00000008610	ENSPREP00000016353	ENSPREP00000008610	DAZ associated protein 1.	RRM domain-containing protein.	0.449
dazap1	tra2b	ENSPREP00000016353	ENSPREP00000013873	DAZ associated protein 1.	Transformer 2 beta homolog.	0.490
prpf19	ENSPREP00000008610	ENSPREP00000003500	ENSPREP00000008610	Pre-mRNA processing factor 19.	RRM domain-containing protein.	0.427
prpf19	cirbp	ENSPREP00000003500	ENSPREP00000026681	Pre-mRNA processing factor 19.	Cold inducible RNA binding protein b.	0.438