(11 nodes) mRNA 5-UTR binding network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SHMT2	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (530 aa)
	utp23	UTP23 small subunit processome component. (255 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1057 aa)
	shmt1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (442 aa)
	rsl1d1	Ribosomal L1 domain containing 1. (393 aa)
	cct5	Chaperonin containing TCP1, subunit 5 (epsilon). (541 aa)
	LOC103461055	Fragile X mental retardation 1. (400 aa)
	fmr1	Fragile X mental retardation 1. (273 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (194 aa)
	larp6	La ribonucleoprotein domain family, member 6a. (687 aa)
	shmt2	Serine hydroxymethyltransferase 2 (mitochondrial). (515 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103461055	fmr1	ENSPREP00000020915	ENSPREP00000004643	Fragile X mental retardation 1.	Fragile X mental retardation 1.	0.932
SHMT2	shmt2	ENSPREP00000002198	ENSPREP00000012687	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase 2 (mitochondrial).	0.901
dhx36	mrps11	ENSPREP00000004177	ENSPREP00000006904	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.449
fmr1	LOC103461055	ENSPREP00000004643	ENSPREP00000020915	Fragile X mental retardation 1.	Fragile X mental retardation 1.	0.932
mrps11	dhx36	ENSPREP00000006904	ENSPREP00000004177	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.449
mrps11	rsl1d1	ENSPREP00000006904	ENSPREP00000024616	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	Ribosomal L1 domain containing 1.	0.730
rsl1d1	mrps11	ENSPREP00000024616	ENSPREP00000006904	Ribosomal L1 domain containing 1.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.730
rsl1d1	utp23	ENSPREP00000024616	ENSPREP00000003411	Ribosomal L1 domain containing 1.	UTP23 small subunit processome component.	0.770
shmt2	SHMT2	ENSPREP00000012687	ENSPREP00000002198	Serine hydroxymethyltransferase 2 (mitochondrial).	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
utp23	rsl1d1	ENSPREP00000003411	ENSPREP00000024616	UTP23 small subunit processome component.	Ribosomal L1 domain containing 1.	0.770