(36 nodes) mRNA stabilization network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tent5d	Uncharacterized protein. (1211 aa)
	meioc	Uncharacterized protein. (822 aa)
	igf2bp2	Insulin-like growth factor 2 mRNA binding protein 2a. (613 aa)
	tent5b	Terminal nucleotidyltransferase 5ba. (392 aa)
	LOC103472384	RNA binding motif protein 24a. (242 aa)
	LOC103467613	RNA binding motif protein 38. (254 aa)
	LOC103468198	Insulin-like growth factor 2 mRNA binding protein 1. (601 aa)
	noct	Nocturnin. (445 aa)
	ENSPREP00000009754	DND microRNA-mediated repression inhibitor 1. (367 aa)
	LOC103463278	ELAV-like protein; Belongs to the RRM elav family. (360 aa)
	tirap	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein. (231 aa)
	LOC103464872	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (376 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1. (953 aa)
	vip	Vasoactive intestinal peptide. (184 aa)
	LOC103472224	Insulin-like growth factor 2 mRNA binding protein 3. (608 aa)
	LOC103463886	Nocturnin. (385 aa)
	e2f1	E2F transcription factor 1. (477 aa)
	dazl	Deleted in azoospermia-like. (217 aa)
	LOC103478593	RNA binding motif protein 24b. (238 aa)
	LOC103475009	RRM domain-containing protein. (335 aa)
	LOC103457719	Uncharacterized protein. (413 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (229 aa)
	rbm46	RNA binding motif protein 46. (572 aa)
	ENSPREP00000021824	Terminal nucleotidyltransferase 5Bb. (489 aa)
	TENT5A	Terminal nucleotidyltransferase 5A. (405 aa)
	rbm38	RRM domain-containing protein. (252 aa)
	ybx1	Y box binding protein 1. (299 aa)
	ENSPREP00000026492	SEFIR domain-containing protein. (109 aa)
	Angel2	Endo/exonuclease/phosphatase domain-containing protein. (374 aa)
	ENSPREP00000027744	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (328 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1216 aa)
	LOC103458862	QKI, KH domain containing, RNA binding a. (389 aa)
	tent5c	Terminal nucleotidyltransferase 5C. (386 aa)
	traf3ip2	SEFIR domain-containing protein. (418 aa)
	LOC103475718	Terminal nucleotidyltransferase 5D. (391 aa)
	LOC103458435	ELAV-like protein; Belongs to the RRM elav family. (348 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000009754	ENSPREP00000027744	ENSPREP00000009754	ENSPREP00000027744	DND microRNA-mediated repression inhibitor 1.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.518
ENSPREP00000009754	dazl	ENSPREP00000009754	ENSPREP00000001636	DND microRNA-mediated repression inhibitor 1.	Deleted in azoospermia-like.	0.717
ENSPREP00000009754	ybx1	ENSPREP00000009754	ENSPREP00000025294	DND microRNA-mediated repression inhibitor 1.	Y box binding protein 1.	0.539
ENSPREP00000026492	traf3ip2	ENSPREP00000026492	ENSPREP00000030465	SEFIR domain-containing protein.	SEFIR domain-containing protein.	0.900
ENSPREP00000027744	ENSPREP00000009754	ENSPREP00000027744	ENSPREP00000009754	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	DND microRNA-mediated repression inhibitor 1.	0.518
ENSPREP00000027744	LOC103458435	ENSPREP00000027744	ENSPREP00000016350	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	ELAV-like protein; Belongs to the RRM elav family.	0.483
ENSPREP00000027744	LOC103463278	ENSPREP00000027744	ENSPREP00000008615	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	ELAV-like protein; Belongs to the RRM elav family.	0.483
ENSPREP00000027744	dhx9	ENSPREP00000027744	ENSPREP00000028546	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.574
ENSPREP00000027744	rbm46	ENSPREP00000027744	ENSPREP00000021390	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RNA binding motif protein 46.	0.518
ENSPREP00000027744	ybx1	ENSPREP00000027744	ENSPREP00000025294	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Y box binding protein 1.	0.596
LOC103458435	ENSPREP00000027744	ENSPREP00000016350	ENSPREP00000027744	ELAV-like protein; Belongs to the RRM elav family.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.483
LOC103458435	LOC103467613	ENSPREP00000016350	ENSPREP00000010847	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 38.	0.592
LOC103458435	LOC103478593	ENSPREP00000016350	ENSPREP00000000998	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 24b.	0.577
LOC103458435	dhx9	ENSPREP00000016350	ENSPREP00000028546	ELAV-like protein; Belongs to the RRM elav family.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.564
LOC103458435	rbm38	ENSPREP00000016350	ENSPREP00000024772	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.595
LOC103458862	dhx9	ENSPREP00000028599	ENSPREP00000028546	QKI, KH domain containing, RNA binding a.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.489
LOC103463278	ENSPREP00000027744	ENSPREP00000008615	ENSPREP00000027744	ELAV-like protein; Belongs to the RRM elav family.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.483
LOC103463278	dhx9	ENSPREP00000008615	ENSPREP00000028546	ELAV-like protein; Belongs to the RRM elav family.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.564
LOC103467613	LOC103458435	ENSPREP00000010847	ENSPREP00000016350	RNA binding motif protein 38.	ELAV-like protein; Belongs to the RRM elav family.	0.592
LOC103478593	LOC103458435	ENSPREP00000000998	ENSPREP00000016350	RNA binding motif protein 24b.	ELAV-like protein; Belongs to the RRM elav family.	0.577