(13 nodes) Retinoic acid receptor signaling pathway network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103477705	Uncharacterized protein. (469 aa)
	LOC103478548	Retinoid x receptor, beta b. (412 aa)
	LOC103482193	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (506 aa)
	RXRB	Retinoid X receptor beta. (417 aa)
	pitx2	Homeobox protein. (312 aa)
	LOC103463575	Uncharacterized protein. (438 aa)
	ptf1a	Pancreas associated transcription factor 1a. (267 aa)
	LOC103472129	Retinoic acid receptor beta. (414 aa)
	LOC103465339	Retinoic acid receptor, gamma b. (405 aa)
	snw1	SNW domain containing 1. (536 aa)
	RARG	Retinoic acid receptor gamma. (517 aa)
	rara	Retinoic acid receptor, alpha a. (452 aa)
	Rxra	Retinoid X receptor, alpha a. (410 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103463575	LOC103465339	ENSPREP00000016159	ENSPREP00000022174	Uncharacterized protein.	Retinoic acid receptor, gamma b.	0.687
LOC103463575	LOC103472129	ENSPREP00000016159	ENSPREP00000020186	Uncharacterized protein.	Retinoic acid receptor beta.	0.609
LOC103463575	LOC103477705	ENSPREP00000016159	ENSPREP00000002294	Uncharacterized protein.	Uncharacterized protein.	0.609
LOC103463575	RARG	ENSPREP00000016159	ENSPREP00000030162	Uncharacterized protein.	Retinoic acid receptor gamma.	0.687
LOC103463575	RXRB	ENSPREP00000016159	ENSPREP00000009524	Uncharacterized protein.	Retinoid X receptor beta.	0.905
LOC103463575	Rxra	ENSPREP00000016159	ENSPREP00000032811	Uncharacterized protein.	Retinoid X receptor, alpha a.	0.907
LOC103463575	rara	ENSPREP00000016159	ENSPREP00000030283	Uncharacterized protein.	Retinoic acid receptor, alpha a.	0.612
LOC103465339	LOC103463575	ENSPREP00000022174	ENSPREP00000016159	Retinoic acid receptor, gamma b.	Uncharacterized protein.	0.687
LOC103465339	LOC103478548	ENSPREP00000022174	ENSPREP00000003469	Retinoic acid receptor, gamma b.	Retinoid x receptor, beta b.	0.609
LOC103465339	RXRB	ENSPREP00000022174	ENSPREP00000009524	Retinoic acid receptor, gamma b.	Retinoid X receptor beta.	0.609
LOC103465339	Rxra	ENSPREP00000022174	ENSPREP00000032811	Retinoic acid receptor, gamma b.	Retinoid X receptor, alpha a.	0.609
LOC103472129	LOC103463575	ENSPREP00000020186	ENSPREP00000016159	Retinoic acid receptor beta.	Uncharacterized protein.	0.609
LOC103472129	LOC103478548	ENSPREP00000020186	ENSPREP00000003469	Retinoic acid receptor beta.	Retinoid x receptor, beta b.	0.609
LOC103472129	RXRB	ENSPREP00000020186	ENSPREP00000009524	Retinoic acid receptor beta.	Retinoid X receptor beta.	0.609
LOC103472129	Rxra	ENSPREP00000020186	ENSPREP00000032811	Retinoic acid receptor beta.	Retinoid X receptor, alpha a.	0.609
LOC103477705	LOC103463575	ENSPREP00000002294	ENSPREP00000016159	Uncharacterized protein.	Uncharacterized protein.	0.609
LOC103477705	LOC103478548	ENSPREP00000002294	ENSPREP00000003469	Uncharacterized protein.	Retinoid x receptor, beta b.	0.609
LOC103477705	RXRB	ENSPREP00000002294	ENSPREP00000009524	Uncharacterized protein.	Retinoid X receptor beta.	0.609
LOC103477705	Rxra	ENSPREP00000002294	ENSPREP00000032811	Uncharacterized protein.	Retinoid X receptor, alpha a.	0.609
LOC103478548	LOC103465339	ENSPREP00000003469	ENSPREP00000022174	Retinoid x receptor, beta b.	Retinoic acid receptor, gamma b.	0.609