(70 nodes) Oogenesis network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000007854	Uncharacterized protein. (143 aa)
	paqr8	Uncharacterized protein. (356 aa)
	LOC103457790	Tudor domain containing 6. (2185 aa)
	tnfaip6	Tumor necrosis factor, alpha-induced protein 6. (239 aa)
	ENSPREP00000026261	Uncharacterized protein. (1093 aa)
	paqr6	Progestin and adipoQ receptor family member VI. (389 aa)
	rec8	REC8 meiotic recombination protein b. (566 aa)
	ybx1	Y box binding protein 1. (299 aa)
	ptx3	Pentraxin 3, long b. (445 aa)
	ythdc1	YTH domain containing 1. (602 aa)
	dmc1	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (343 aa)
	atm	Non-specific serine/threonine protein kinase. (3091 aa)
	LOC103466036	ZP domain-containing protein. (423 aa)
	ENSPREP00000022132	Progestin and adipoQ receptor family member VII, a. (352 aa)
	LOC103480553	Tudor domain containing 7 b. (1139 aa)
	ENSPREP00000020363	GATA-type domain-containing protein. (318 aa)
	pld6	Phospholipase D family, member 6. (211 aa)
	mthfsd	Methenyltetrahydrofolate synthetase domain containing. (503 aa)
	brca2	BRCA2 DNA repair associated. (3038 aa)
	tdrd5	Uncharacterized protein. (756 aa)
	YTHDC2	YTH domain containing 2. (1418 aa)
	mei4	Meiotic double-stranded break formation protein 4. (376 aa)
	LOC103480536	Methyltransferase like 3; Belongs to the MT-A70-like family. (287 aa)
	ercc1	Excision repair cross-complementation group 1. (358 aa)
	LOC103476935	ZP domain-containing protein. (392 aa)
	star	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone. (286 aa)
	meioc	Uncharacterized protein. (822 aa)
	fst	Follistatin a. (351 aa)
	LOC103469983	EGF-like domain-containing protein. (154 aa)
	sebox	Homeobox domain-containing protein. (283 aa)
	Zcchc6	Uncharacterized protein. (187 aa)
	ENSPREP00000013441	Uncharacterized protein. (138 aa)
	TUT7	Terminal uridylyl transferase 7. (673 aa)
	ZNF830	Zinc finger protein 830. (333 aa)
	WDR77	WD repeat domain 77. (347 aa)
	edn1	Endothelin 1. (207 aa)
	LOC103478454	Progestin and adipoQ receptor family member VII, b. (352 aa)
	spo11	SPO11 initiator of meiotic double stranded breaks. (379 aa)
	dctn2	Dynactin 2 (p50). (403 aa)
	paqr5	Progestin and adipoQ receptor family member Va. (358 aa)
	NANOS1	Nanos C2HC-type zinc finger 1; Belongs to the nanos family. (221 aa)
	LOC103471867	Nanos homolog 1; Belongs to the nanos family. (232 aa)
	LOC103466639	Protein tyrosine phosphatase non-receptor type 9b. (751 aa)
	LOC103476626	Luteinizing hormone, beta polypeptide. (147 aa)
	gdf9	Growth differentiation factor 9. (430 aa)
	tdrkh	Tudor and KH domain containing. (587 aa)
	bcl2	BCL2 apoptosis regulator b. (230 aa)
	EDNRA	Endothelin receptor type A; Belongs to the G-protein coupled receptor 1 family. (372 aa)
	GPR149	G protein-coupled receptor 149. (766 aa)
	fbxo5	F-box protein 5. (376 aa)
	ccdc36	Uncharacterized protein. (429 aa)
	mlh1	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (726 aa)
	dazl	Deleted in azoospermia-like. (217 aa)
	ENSPREP00000000840	Uncharacterized protein. (140 aa)
	ENSPREP00000000810	Uncharacterized protein. (142 aa)
	MARF1	Meiosis regulator and mRNA stability factor 1. (1791 aa)
	nanos3	Nanos homolog 3; Belongs to the nanos family. (209 aa)
	tdrd7	Tudor domain containing 7 a. (1192 aa)
	ythdf2	YTH N(6)-methyladenosine RNA binding protein 2. (639 aa)
	hormad1	HORMA domain containing 1. (372 aa)
	piwil2	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (1055 aa)
	ccnb1	Cyclin B1; Belongs to the cyclin family. (401 aa)
	ENSPREP00000030212	Nanos homolog 2; Belongs to the nanos family. (116 aa)
	trip13	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (414 aa)
	ptn	Pleiotrophin. (161 aa)
	LOC103456706	Uncharacterized protein. (819 aa)
	ENSPREP00000033092	Uncharacterized protein. (546 aa)
	henmt1	HEN methyltransferase 1. (360 aa)
	tdrd1	Tudor domain containing 1. (1184 aa)
	LOC103471340	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (440 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDNRA	edn1	ENSPREP00000004362	ENSPREP00000012837	Endothelin receptor type A; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.971
ENSPREP00000000810	ENSPREP00000000840	ENSPREP00000000810	ENSPREP00000000840	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSPREP00000000810	TUT7	ENSPREP00000000810	ENSPREP00000013423	Uncharacterized protein.	Terminal uridylyl transferase 7.	0.901
ENSPREP00000000840	ENSPREP00000000810	ENSPREP00000000840	ENSPREP00000000810	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSPREP00000007854	LOC103480536	ENSPREP00000007854	ENSPREP00000015801	Uncharacterized protein.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.899
ENSPREP00000007854	YTHDC2	ENSPREP00000007854	ENSPREP00000017945	Uncharacterized protein.	YTH domain containing 2.	0.464
ENSPREP00000007854	ythdc1	ENSPREP00000007854	ENSPREP00000025175	Uncharacterized protein.	YTH domain containing 1.	0.497
ENSPREP00000013441	TUT7	ENSPREP00000013441	ENSPREP00000013423	Uncharacterized protein.	Terminal uridylyl transferase 7.	0.899
ENSPREP00000013441	Zcchc6	ENSPREP00000013441	ENSPREP00000013451	Uncharacterized protein.	Uncharacterized protein.	0.892
ENSPREP00000020363	henmt1	ENSPREP00000020363	ENSPREP00000033300	GATA-type domain-containing protein.	HEN methyltransferase 1.	0.476
ENSPREP00000026261	piwil2	ENSPREP00000026261	ENSPREP00000029114	Uncharacterized protein.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.832
ENSPREP00000026261	tdrkh	ENSPREP00000026261	ENSPREP00000006136	Uncharacterized protein.	Tudor and KH domain containing.	0.536
ENSPREP00000030212	dazl	ENSPREP00000030212	ENSPREP00000001636	Nanos homolog 2; Belongs to the nanos family.	Deleted in azoospermia-like.	0.573
ENSPREP00000030212	piwil2	ENSPREP00000030212	ENSPREP00000029114	Nanos homolog 2; Belongs to the nanos family.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.476
ENSPREP00000030212	spo11	ENSPREP00000030212	ENSPREP00000011861	Nanos homolog 2; Belongs to the nanos family.	SPO11 initiator of meiotic double stranded breaks.	0.483
ENSPREP00000033092	LOC103457790	ENSPREP00000033092	ENSPREP00000027827	Uncharacterized protein.	Tudor domain containing 6.	0.472
ENSPREP00000033092	dazl	ENSPREP00000033092	ENSPREP00000001636	Uncharacterized protein.	Deleted in azoospermia-like.	0.476
ENSPREP00000033092	nanos3	ENSPREP00000033092	ENSPREP00000000566	Uncharacterized protein.	Nanos homolog 3; Belongs to the nanos family.	0.474
GPR149	YTHDC2	ENSPREP00000004196	ENSPREP00000017945	G protein-coupled receptor 149.	YTH domain containing 2.	0.504
GPR149	tdrd5	ENSPREP00000004196	ENSPREP00000018045	G protein-coupled receptor 149.	Uncharacterized protein.	0.414