(27 nodes) Long-term synaptic potentiation network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103462623	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b. (1385 aa)
	LOC103467909	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (615 aa)
	LOC103472853	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1973 aa)
	ENSPREP00000001630	RHD domain-containing protein. (238 aa)
	Nfatc4	Uncharacterized protein. (238 aa)
	prrt1	Proline-rich transmembrane protein 1. (250 aa)
	tshz3	Teashirt zinc finger homeobox 3b. (1068 aa)
	LOC103462684	Neuroplastin b. (379 aa)
	ENSPREP00000009542	Leucine rich repeat transmembrane neuronal 2. (546 aa)
	LOC103478060	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1839 aa)
	LOC103467387	Leucine rich repeat transmembrane neuronal 1. (524 aa)
	LOC103481634	Uncharacterized protein. (1385 aa)
	LOC103466550	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (727 aa)
	LOC103466551	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (621 aa)
	LOC103474919	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (762 aa)
	syt12	Synaptotagmin XII. (423 aa)
	mecp2	Methyl CpG binding protein 2. (982 aa)
	LOC103468798	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b. (1596 aa)
	LOC103469050	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca. (1414 aa)
	LOC103466432	Si:ch73-330k17.3. (167 aa)
	LOC103466425	Uncharacterized protein. (380 aa)
	grin2b	Uncharacterized protein. (1706 aa)
	RELN	Reelin. (3446 aa)
	grin2a	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1552 aa)
	SLC24A1	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (771 aa)
	SLC24A2	Solute carrier family 24 member 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (633 aa)
	LOC103466207	Teashirt zinc finger homeobox 3a. (1112 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001630	Nfatc4	ENSPREP00000001630	ENSPREP00000001665	RHD domain-containing protein.	Uncharacterized protein.	0.865
LOC103462623	LOC103468798	ENSPREP00000000034	ENSPREP00000018974	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.591
LOC103462623	LOC103481634	ENSPREP00000000034	ENSPREP00000013842	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	Uncharacterized protein.	0.401
LOC103462623	grin2b	ENSPREP00000000034	ENSPREP00000024202	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	Uncharacterized protein.	0.583
LOC103466550	SLC24A1	ENSPREP00000014378	ENSPREP00000028291	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.905
LOC103468798	LOC103462623	ENSPREP00000018974	ENSPREP00000000034	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	0.591
LOC103468798	grin2a	ENSPREP00000018974	ENSPREP00000027876	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.583
LOC103468798	mecp2	ENSPREP00000018974	ENSPREP00000018569	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	Methyl CpG binding protein 2.	0.406
LOC103481634	LOC103462623	ENSPREP00000013842	ENSPREP00000000034	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	0.401
Nfatc4	ENSPREP00000001630	ENSPREP00000001665	ENSPREP00000001630	Uncharacterized protein.	RHD domain-containing protein.	0.865
SLC24A1	LOC103466550	ENSPREP00000028291	ENSPREP00000014378	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.905
grin2a	LOC103468798	ENSPREP00000027876	ENSPREP00000018974	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.583
grin2a	grin2b	ENSPREP00000027876	ENSPREP00000024202	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Uncharacterized protein.	0.583
grin2b	LOC103462623	ENSPREP00000024202	ENSPREP00000000034	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	0.583
grin2b	grin2a	ENSPREP00000024202	ENSPREP00000027876	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.583
grin2b	mecp2	ENSPREP00000024202	ENSPREP00000018569	Uncharacterized protein.	Methyl CpG binding protein 2.	0.406
mecp2	LOC103468798	ENSPREP00000018569	ENSPREP00000018974	Methyl CpG binding protein 2.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.406
mecp2	grin2b	ENSPREP00000018569	ENSPREP00000024202	Methyl CpG binding protein 2.	Uncharacterized protein.	0.406