(19 nodes) Reticulophagy network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snx30	Sorting nexin family member 30. (443 aa)
	ulk1	Unc-51 like autophagy activating kinase 1. (1024 aa)
	rb1cc1	RB1-inducible coiled-coil 1. (1616 aa)
	uba5	Ubiquitin-like modifier activating enzyme 5. (400 aa)
	psmc3ip	Reticulophagy regulator family member 3. (496 aa)
	tex264	Testis expressed 264, ER-phagy receptor a. (343 aa)
	ATG2B	Autophagy related 2B. (2074 aa)
	retreg2	Reticulophagy regulator family member 2. (561 aa)
	ufm1	Ubiquitin-fold modifier 1. (78 aa)
	UFC1	Ubiquitin-fold modifier conjugating enzyme 1. (140 aa)
	ulk2	Unc-51 like autophagy activating kinase 2. (1055 aa)
	atg2a	Autophagy related 2A. (2011 aa)
	snx7	Sorting nexin 7. (463 aa)
	retreg1	Reticulophagy regulator 1. (336 aa)
	ddrgk1	Uncharacterized protein. (143 aa)
	ufl1	UFM1-specific ligase 1. (792 aa)
	ENSPREP00000002203	Unc-51 like autophagy activating kinase 1a. (587 aa)
	ENSPREP00000005380	Uncharacterized protein. (200 aa)
	sting1	Transmembrane protein 173. (484 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	ENSPREP00000002203	ENSPREP00000015029	ENSPREP00000002203	Autophagy related 2B.	Unc-51 like autophagy activating kinase 1a.	0.785
ATG2B	atg2a	ENSPREP00000015029	ENSPREP00000022617	Autophagy related 2B.	Autophagy related 2A.	0.909
ATG2B	rb1cc1	ENSPREP00000015029	ENSPREP00000012221	Autophagy related 2B.	RB1-inducible coiled-coil 1.	0.571
ATG2B	ulk1	ENSPREP00000015029	ENSPREP00000009719	Autophagy related 2B.	Unc-51 like autophagy activating kinase 1.	0.977
ATG2B	ulk2	ENSPREP00000015029	ENSPREP00000023126	Autophagy related 2B.	Unc-51 like autophagy activating kinase 2.	0.977
ENSPREP00000002203	ATG2B	ENSPREP00000002203	ENSPREP00000015029	Unc-51 like autophagy activating kinase 1a.	Autophagy related 2B.	0.785
ENSPREP00000002203	atg2a	ENSPREP00000002203	ENSPREP00000022617	Unc-51 like autophagy activating kinase 1a.	Autophagy related 2A.	0.785
ENSPREP00000002203	rb1cc1	ENSPREP00000002203	ENSPREP00000012221	Unc-51 like autophagy activating kinase 1a.	RB1-inducible coiled-coil 1.	0.947
ENSPREP00000002203	snx30	ENSPREP00000002203	ENSPREP00000008011	Unc-51 like autophagy activating kinase 1a.	Sorting nexin family member 30.	0.416
ENSPREP00000002203	snx7	ENSPREP00000002203	ENSPREP00000019923	Unc-51 like autophagy activating kinase 1a.	Sorting nexin 7.	0.416
UFC1	ddrgk1	ENSPREP00000025245	ENSPREP00000026059	Ubiquitin-fold modifier conjugating enzyme 1.	Uncharacterized protein.	0.788
UFC1	uba5	ENSPREP00000025245	ENSPREP00000013586	Ubiquitin-fold modifier conjugating enzyme 1.	Ubiquitin-like modifier activating enzyme 5.	0.968
UFC1	ufl1	ENSPREP00000025245	ENSPREP00000002935	Ubiquitin-fold modifier conjugating enzyme 1.	UFM1-specific ligase 1.	0.792
UFC1	ufm1	ENSPREP00000025245	ENSPREP00000017768	Ubiquitin-fold modifier conjugating enzyme 1.	Ubiquitin-fold modifier 1.	0.927
atg2a	ATG2B	ENSPREP00000022617	ENSPREP00000015029	Autophagy related 2A.	Autophagy related 2B.	0.909
atg2a	ENSPREP00000002203	ENSPREP00000022617	ENSPREP00000002203	Autophagy related 2A.	Unc-51 like autophagy activating kinase 1a.	0.785
atg2a	rb1cc1	ENSPREP00000022617	ENSPREP00000012221	Autophagy related 2A.	RB1-inducible coiled-coil 1.	0.571
atg2a	ulk1	ENSPREP00000022617	ENSPREP00000009719	Autophagy related 2A.	Unc-51 like autophagy activating kinase 1.	0.977
atg2a	ulk2	ENSPREP00000022617	ENSPREP00000023126	Autophagy related 2A.	Unc-51 like autophagy activating kinase 2.	0.977
ddrgk1	UFC1	ENSPREP00000026059	ENSPREP00000025245	Uncharacterized protein.	Ubiquitin-fold modifier conjugating enzyme 1.	0.788