13 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tie1	Tyrosine kinase with immunoglobulin-like and EGF-like domains 1. (1138 aa)
	ENSPREP00000028495	Uncharacterized protein. (149 aa)
	CCN3	Cellular communication network factor 3. (349 aa)
	ctnna2	Catenin (cadherin-associated protein), alpha 2. (933 aa)
	srf	Serum response factor b. (570 aa)
	LOC103471147	Catenin (cadherin-associated protein), alpha 1. (847 aa)
	SRF	Serum response factor. (243 aa)
	LOC103465714	Pleckstrin homology domain containing, family A member 7a. (1385 aa)
	vcl	Vinculin b. (1100 aa)
	LOC103477101	Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (536 aa)
	LOC103462436	Pleckstrin homology domain containing, family A member 7b. (1081 aa)
	LOC103476978	Vinculin a. (1135 aa)
	ENSPREP00000030584	Cytochrome P450, family 1, subfamily C, polypeptide 2. (479 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000028495	LOC103471147	ENSPREP00000028495	ENSPREP00000009514	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha 1.	0.928
ENSPREP00000028495	LOC103476978	ENSPREP00000028495	ENSPREP00000032212	Uncharacterized protein.	Vinculin a.	0.615
ENSPREP00000028495	vcl	ENSPREP00000028495	ENSPREP00000004437	Uncharacterized protein.	Vinculin b.	0.615
LOC103471147	ENSPREP00000028495	ENSPREP00000009514	ENSPREP00000028495	Catenin (cadherin-associated protein), alpha 1.	Uncharacterized protein.	0.928
LOC103471147	LOC103476978	ENSPREP00000009514	ENSPREP00000032212	Catenin (cadherin-associated protein), alpha 1.	Vinculin a.	0.615
LOC103471147	vcl	ENSPREP00000009514	ENSPREP00000004437	Catenin (cadherin-associated protein), alpha 1.	Vinculin b.	0.615
LOC103476978	ENSPREP00000028495	ENSPREP00000032212	ENSPREP00000028495	Vinculin a.	Uncharacterized protein.	0.615
LOC103476978	LOC103471147	ENSPREP00000032212	ENSPREP00000009514	Vinculin a.	Catenin (cadherin-associated protein), alpha 1.	0.615
LOC103476978	ctnna2	ENSPREP00000032212	ENSPREP00000013533	Vinculin a.	Catenin (cadherin-associated protein), alpha 2.	0.959
LOC103476978	vcl	ENSPREP00000032212	ENSPREP00000004437	Vinculin a.	Vinculin b.	0.900
ctnna2	LOC103476978	ENSPREP00000013533	ENSPREP00000032212	Catenin (cadherin-associated protein), alpha 2.	Vinculin a.	0.959
ctnna2	vcl	ENSPREP00000013533	ENSPREP00000004437	Catenin (cadherin-associated protein), alpha 2.	Vinculin b.	0.959
vcl	ENSPREP00000028495	ENSPREP00000004437	ENSPREP00000028495	Vinculin b.	Uncharacterized protein.	0.615
vcl	LOC103471147	ENSPREP00000004437	ENSPREP00000009514	Vinculin b.	Catenin (cadherin-associated protein), alpha 1.	0.615
vcl	LOC103476978	ENSPREP00000004437	ENSPREP00000032212	Vinculin b.	Vinculin a.	0.900
vcl	ctnna2	ENSPREP00000004437	ENSPREP00000013533	Vinculin b.	Catenin (cadherin-associated protein), alpha 2.	0.959