(7 nodes) Neuroblast migration network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Six3	SIX homeobox 3a. (341 aa)
	LOC103470946	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (423 aa)
	six6	SIX homeobox 6a. (245 aa)
	LOC103478941	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family. (467 aa)
	LOC103459074	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family. (424 aa)
	LOC103475931	SIX homeobox 7. (260 aa)
	LOC103481539	SIX homeobox 3b. (277 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103459074	LOC103470946	ENSPREP00000002951	ENSPREP00000032490	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC103459074	LOC103478941	ENSPREP00000002951	ENSPREP00000002847	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC103470946	LOC103459074	ENSPREP00000032490	ENSPREP00000002951	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC103470946	LOC103478941	ENSPREP00000032490	ENSPREP00000002847	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.	0.901
LOC103478941	LOC103459074	ENSPREP00000002847	ENSPREP00000002951	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC103478941	LOC103470946	ENSPREP00000002847	ENSPREP00000032490	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.901