(20 nodes) Sperm flagellum assembly network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cfap206	Cilia and flagella associated protein 206. (626 aa)
	drc7	Uncharacterized protein. (720 aa)
	armc2	Armadillo repeat containing 2. (583 aa)
	ENSPREP00000007296	Uncharacterized protein. (88 aa)
	cfap69	Uncharacterized protein. (880 aa)
	cfap221	Uncharacterized protein. (808 aa)
	tpgs1	Uncharacterized protein. (296 aa)
	spef2	Calponin-homology (CH) domain-containing protein. (1793 aa)
	ENSPREP00000019710	Uncharacterized protein. (1054 aa)
	ENSPREP00000019960	WD_REPEATS_REGION domain-containing protein. (326 aa)
	ENSPREP00000021013	Uncharacterized protein. (392 aa)
	spag6	Sperm associated antigen 6. (542 aa)
	cfap65	Si:ch1073-349o24.2. (1707 aa)
	LOC103470741	Uncharacterized protein. (536 aa)
	ift81	Intraflagellar transport 81 homolog. (673 aa)
	Cfap44	WD_REPEATS_REGION domain-containing protein. (696 aa)
	ENSPREP00000028906	Uncharacterized protein. (557 aa)
	yif1b	Yip1 interacting factor homolog B (S. cerevisiae). (305 aa)
	ttc12	Tetratricopeptide repeat domain 12. (905 aa)
	ttll1	Tubulin tyrosine ligase-like family, member 1. (424 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cfap44	ENSPREP00000019710	ENSPREP00000028881	ENSPREP00000019710	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.526
Cfap44	ENSPREP00000028906	ENSPREP00000028881	ENSPREP00000028906	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.939
Cfap44	ift81	ENSPREP00000028881	ENSPREP00000024120	WD_REPEATS_REGION domain-containing protein.	Intraflagellar transport 81 homolog.	0.551
ENSPREP00000019710	Cfap44	ENSPREP00000019710	ENSPREP00000028881	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.526
ENSPREP00000019710	ENSPREP00000028906	ENSPREP00000019710	ENSPREP00000028906	Uncharacterized protein.	Uncharacterized protein.	0.526
ENSPREP00000019710	drc7	ENSPREP00000019710	ENSPREP00000006787	Uncharacterized protein.	Uncharacterized protein.	0.483
ENSPREP00000019710	spef2	ENSPREP00000019710	ENSPREP00000019179	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.514
ENSPREP00000019960	ift81	ENSPREP00000019960	ENSPREP00000024120	WD_REPEATS_REGION domain-containing protein.	Intraflagellar transport 81 homolog.	0.551
ENSPREP00000028906	Cfap44	ENSPREP00000028906	ENSPREP00000028881	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.939
ENSPREP00000028906	ENSPREP00000019710	ENSPREP00000028906	ENSPREP00000019710	Uncharacterized protein.	Uncharacterized protein.	0.526
ENSPREP00000028906	ift81	ENSPREP00000028906	ENSPREP00000024120	Uncharacterized protein.	Intraflagellar transport 81 homolog.	0.551
cfap221	cfap69	ENSPREP00000012794	ENSPREP00000012684	Uncharacterized protein.	Uncharacterized protein.	0.559
cfap221	spag6	ENSPREP00000012794	ENSPREP00000022358	Uncharacterized protein.	Sperm associated antigen 6.	0.536
cfap65	ift81	ENSPREP00000022927	ENSPREP00000024120	Si:ch1073-349o24.2.	Intraflagellar transport 81 homolog.	0.400
cfap69	cfap221	ENSPREP00000012684	ENSPREP00000012794	Uncharacterized protein.	Uncharacterized protein.	0.559
drc7	ENSPREP00000019710	ENSPREP00000006787	ENSPREP00000019710	Uncharacterized protein.	Uncharacterized protein.	0.483
ift81	Cfap44	ENSPREP00000024120	ENSPREP00000028881	Intraflagellar transport 81 homolog.	WD_REPEATS_REGION domain-containing protein.	0.551
ift81	ENSPREP00000019960	ENSPREP00000024120	ENSPREP00000019960	Intraflagellar transport 81 homolog.	WD_REPEATS_REGION domain-containing protein.	0.551
ift81	ENSPREP00000028906	ENSPREP00000024120	ENSPREP00000028906	Intraflagellar transport 81 homolog.	Uncharacterized protein.	0.551
ift81	cfap65	ENSPREP00000024120	ENSPREP00000022927	Intraflagellar transport 81 homolog.	Si:ch1073-349o24.2.	0.400