(40 nodes) Filopodium network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103460195	Uncharacterized protein. (594 aa)
	myo3a	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1787 aa)
	ABI1	Abl-interactor 1a. (577 aa)
	LOC103480164	Fragile X mental retardation, autosomal homolog 2. (656 aa)
	ppp1r9a	Protein phosphatase 1, regulatory subunit 9A. (1113 aa)
	ENSPREP00000003699	SH3 domain-containing protein. (137 aa)
	ENSPREP00000003717	Uncharacterized protein. (76 aa)
	Kitlg	Kit ligand a. (201 aa)
	fmr1	Fragile X mental retardation 1. (273 aa)
	LOC103468820	BAI1-associated protein 2a. (549 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1265 aa)
	LOC103458430	Protein phosphatase 1 regulatory subunit 9A-like A. (1444 aa)
	gap43	Growth associated protein 43. (237 aa)
	LOC103470516	ANTXR cell adhesion molecule 1a. (626 aa)
	cd302	CD302 molecule. (248 aa)
	LOC103481654	Protein phosphatase 1, regulatory subunit 9Bb. (813 aa)
	LOC103459010	Pellino E3 ubiquitin protein ligase family member 2. (424 aa)
	ENSPREP00000016383	ADP-ribosylation factor 6b. (113 aa)
	LOC103468315	PDZ domain-containing protein. (933 aa)
	LOC103458406	Paralemmin 1b. (225 aa)
	rufy3	RUN and FYVE domain containing 3. (660 aa)
	ENSPREP00000019994	Uncharacterized protein. (95 aa)
	LOC103479350	Zgc:171558. (952 aa)
	ENSPREP00000020216	PDZ domain-containing protein. (88 aa)
	LOC103473771	Unc-5 netrin receptor C. (922 aa)
	LOC103461055	Fragile X mental retardation 1. (400 aa)
	avil	Advillin. (816 aa)
	nav3	Neuron navigator 3. (2166 aa)
	abi2	Uncharacterized protein. (491 aa)
	BAIAP2	BAI1 associated protein 2. (569 aa)
	ENSPREP00000022524	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (174 aa)
	LOC103457902	Uncharacterized protein. (430 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (195 aa)
	inppl1	Inositol polyphosphate phosphatase-like 1a. (1248 aa)
	LOC103470231	Unc-5 netrin receptor C. (955 aa)
	vill	Villin-like. (845 aa)
	NRGN	Neurogranin. (90 aa)
	ENSPREP00000032937	SH3 domain-containing protein. (87 aa)
	LOC103467797	Rap guanine nucleotide exchange factor (GEF) 3. (878 aa)
	fxr1	Fragile X mental retardation, autosomal homolog 1. (571 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI1	BAIAP2	ENSPREP00000001513	ENSPREP00000022196	Abl-interactor 1a.	BAI1 associated protein 2.	0.714
ABI1	ENSPREP00000032937	ENSPREP00000001513	ENSPREP00000032937	Abl-interactor 1a.	SH3 domain-containing protein.	0.625
ABI1	LOC103468820	ENSPREP00000001513	ENSPREP00000004709	Abl-interactor 1a.	BAI1-associated protein 2a.	0.714
BAIAP2	ABI1	ENSPREP00000022196	ENSPREP00000001513	BAI1 associated protein 2.	Abl-interactor 1a.	0.714
BAIAP2	ENSPREP00000003699	ENSPREP00000022196	ENSPREP00000003699	BAI1 associated protein 2.	SH3 domain-containing protein.	0.714
BAIAP2	ENSPREP00000003717	ENSPREP00000022196	ENSPREP00000003717	BAI1 associated protein 2.	Uncharacterized protein.	0.714
BAIAP2	ENSPREP00000032937	ENSPREP00000022196	ENSPREP00000032937	BAI1 associated protein 2.	SH3 domain-containing protein.	0.711
BAIAP2	LOC103460195	ENSPREP00000022196	ENSPREP00000017064	BAI1 associated protein 2.	Uncharacterized protein.	0.562
BAIAP2	LOC103468820	ENSPREP00000022196	ENSPREP00000004709	BAI1 associated protein 2.	BAI1-associated protein 2a.	0.901
BAIAP2	abi2	ENSPREP00000022196	ENSPREP00000022133	BAI1 associated protein 2.	Uncharacterized protein.	0.562
ENSPREP00000003699	BAIAP2	ENSPREP00000003699	ENSPREP00000022196	SH3 domain-containing protein.	BAI1 associated protein 2.	0.714
ENSPREP00000003699	ENSPREP00000032937	ENSPREP00000003699	ENSPREP00000032937	SH3 domain-containing protein.	SH3 domain-containing protein.	0.634
ENSPREP00000003699	LOC103468820	ENSPREP00000003699	ENSPREP00000004709	SH3 domain-containing protein.	BAI1-associated protein 2a.	0.714
ENSPREP00000003717	BAIAP2	ENSPREP00000003717	ENSPREP00000022196	Uncharacterized protein.	BAI1 associated protein 2.	0.714
ENSPREP00000003717	ENSPREP00000032937	ENSPREP00000003717	ENSPREP00000032937	Uncharacterized protein.	SH3 domain-containing protein.	0.625
ENSPREP00000003717	LOC103468820	ENSPREP00000003717	ENSPREP00000004709	Uncharacterized protein.	BAI1-associated protein 2a.	0.714
ENSPREP00000032937	ABI1	ENSPREP00000032937	ENSPREP00000001513	SH3 domain-containing protein.	Abl-interactor 1a.	0.625
ENSPREP00000032937	BAIAP2	ENSPREP00000032937	ENSPREP00000022196	SH3 domain-containing protein.	BAI1 associated protein 2.	0.711
ENSPREP00000032937	ENSPREP00000003699	ENSPREP00000032937	ENSPREP00000003699	SH3 domain-containing protein.	SH3 domain-containing protein.	0.634
ENSPREP00000032937	ENSPREP00000003717	ENSPREP00000032937	ENSPREP00000003717	SH3 domain-containing protein.	Uncharacterized protein.	0.625