(16 nodes) Integral component of mitochondrial outer membrane network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fundc1	Uncharacterized protein. (159 aa)
	gdap1l1	Ganglioside induced differentiation associated protein 1-like 1. (366 aa)
	rhot2	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (623 aa)
	tomm70	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (578 aa)
	LOC103476353	Uncharacterized protein. (452 aa)
	LOC103479374	Mitochondrial E3 ubiquitin protein ligase 1a. (356 aa)
	LOC103469295	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (623 aa)
	LOC103479102	Uncharacterized protein. (214 aa)
	tomm20	Translocase of outer mitochondrial membrane 20b. (146 aa)
	FUNDC1	FUN14 domain containing 1. (154 aa)
	fis1	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering. (154 aa)
	bnip3	BCL2 interacting protein 3. (178 aa)
	gdap1	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily. (362 aa)
	LOC103468085	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (660 aa)
	mul1	Mitochondrial E3 ubiquitin protein ligase 1b. (352 aa)
	LOC103478854	Zgc:162816. (370 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FUNDC1	bnip3	ENSPREP00000014071	ENSPREP00000018111	FUN14 domain containing 1.	BCL2 interacting protein 3.	0.525
FUNDC1	fundc1	ENSPREP00000014071	ENSPREP00000030564	FUN14 domain containing 1.	Uncharacterized protein.	0.901
LOC103468085	LOC103476353	ENSPREP00000023321	ENSPREP00000024215	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Uncharacterized protein.	0.901
LOC103468085	LOC103479374	ENSPREP00000023321	ENSPREP00000024145	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Mitochondrial E3 ubiquitin protein ligase 1a.	0.443
LOC103468085	mul1	ENSPREP00000023321	ENSPREP00000031865	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Mitochondrial E3 ubiquitin protein ligase 1b.	0.443
LOC103468085	rhot2	ENSPREP00000023321	ENSPREP00000027007	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.901
LOC103468085	tomm20	ENSPREP00000023321	ENSPREP00000011703	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Translocase of outer mitochondrial membrane 20b.	0.638
LOC103468085	tomm70	ENSPREP00000023321	ENSPREP00000026402	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.605
LOC103469295	LOC103479374	ENSPREP00000001936	ENSPREP00000024145	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Mitochondrial E3 ubiquitin protein ligase 1a.	0.443
LOC103469295	mul1	ENSPREP00000001936	ENSPREP00000031865	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Mitochondrial E3 ubiquitin protein ligase 1b.	0.443
LOC103469295	tomm20	ENSPREP00000001936	ENSPREP00000011703	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Translocase of outer mitochondrial membrane 20b.	0.638
LOC103469295	tomm70	ENSPREP00000001936	ENSPREP00000026402	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.605
LOC103476353	LOC103468085	ENSPREP00000024215	ENSPREP00000023321	Uncharacterized protein.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.901
LOC103476353	LOC103479374	ENSPREP00000024215	ENSPREP00000024145	Uncharacterized protein.	Mitochondrial E3 ubiquitin protein ligase 1a.	0.443
LOC103476353	mul1	ENSPREP00000024215	ENSPREP00000031865	Uncharacterized protein.	Mitochondrial E3 ubiquitin protein ligase 1b.	0.443
LOC103476353	rhot2	ENSPREP00000024215	ENSPREP00000027007	Uncharacterized protein.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.903
LOC103476353	tomm20	ENSPREP00000024215	ENSPREP00000011703	Uncharacterized protein.	Translocase of outer mitochondrial membrane 20b.	0.638
LOC103476353	tomm70	ENSPREP00000024215	ENSPREP00000026402	Uncharacterized protein.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.605
LOC103479374	LOC103468085	ENSPREP00000024145	ENSPREP00000023321	Mitochondrial E3 ubiquitin protein ligase 1a.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.443
LOC103479374	LOC103469295	ENSPREP00000024145	ENSPREP00000001936	Mitochondrial E3 ubiquitin protein ligase 1a.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.443