(13 nodes) Myelin sheath network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103475755	Proteolipid protein 1b. (257 aa)
	LOC103457917	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (767 aa)
	ENSPREP00000021201	Uncharacterized protein. (128 aa)
	ncmap	Uncharacterized protein. (129 aa)
	pllp	Plasmolipin. (183 aa)
	prxl2b	Peroxiredoxin like 2B. (201 aa)
	LOC103471165	Proteolipid protein 1a. (254 aa)
	mbp	Myelin basic protein b. (142 aa)
	HSP90AA1	Heat shock protein 90 alpha family class A member 1. (496 aa)
	ENSPREP00000029699	Myelin protein zero. (284 aa)
	PMP22	Peripheral myelin protein 22b. (108 aa)
	LOC103473035	Uncharacterized protein. (136 aa)
	sirt2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (385 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000021201	LOC103471165	ENSPREP00000021201	ENSPREP00000010201	Uncharacterized protein.	Proteolipid protein 1a.	0.434
ENSPREP00000021201	LOC103475755	ENSPREP00000021201	ENSPREP00000032312	Uncharacterized protein.	Proteolipid protein 1b.	0.434
ENSPREP00000029699	LOC103471165	ENSPREP00000029699	ENSPREP00000010201	Myelin protein zero.	Proteolipid protein 1a.	0.486
ENSPREP00000029699	LOC103475755	ENSPREP00000029699	ENSPREP00000032312	Myelin protein zero.	Proteolipid protein 1b.	0.466
ENSPREP00000029699	pllp	ENSPREP00000029699	ENSPREP00000001115	Myelin protein zero.	Plasmolipin.	0.473
LOC103471165	ENSPREP00000021201	ENSPREP00000010201	ENSPREP00000021201	Proteolipid protein 1a.	Uncharacterized protein.	0.434
LOC103471165	ENSPREP00000029699	ENSPREP00000010201	ENSPREP00000029699	Proteolipid protein 1a.	Myelin protein zero.	0.486
LOC103471165	mbp	ENSPREP00000010201	ENSPREP00000021220	Proteolipid protein 1a.	Myelin basic protein b.	0.713
LOC103471165	pllp	ENSPREP00000010201	ENSPREP00000001115	Proteolipid protein 1a.	Plasmolipin.	0.529
LOC103473035	LOC103475755	ENSPREP00000013693	ENSPREP00000032312	Uncharacterized protein.	Proteolipid protein 1b.	0.575
LOC103475755	ENSPREP00000021201	ENSPREP00000032312	ENSPREP00000021201	Proteolipid protein 1b.	Uncharacterized protein.	0.434
LOC103475755	ENSPREP00000029699	ENSPREP00000032312	ENSPREP00000029699	Proteolipid protein 1b.	Myelin protein zero.	0.466
LOC103475755	LOC103473035	ENSPREP00000032312	ENSPREP00000013693	Proteolipid protein 1b.	Uncharacterized protein.	0.575
LOC103475755	mbp	ENSPREP00000032312	ENSPREP00000021220	Proteolipid protein 1b.	Myelin basic protein b.	0.713
mbp	LOC103471165	ENSPREP00000021220	ENSPREP00000010201	Myelin basic protein b.	Proteolipid protein 1a.	0.713
mbp	LOC103475755	ENSPREP00000021220	ENSPREP00000032312	Myelin basic protein b.	Proteolipid protein 1b.	0.713
pllp	ENSPREP00000029699	ENSPREP00000001115	ENSPREP00000029699	Plasmolipin.	Myelin protein zero.	0.473
pllp	LOC103471165	ENSPREP00000001115	ENSPREP00000010201	Plasmolipin.	Proteolipid protein 1a.	0.529