(14 nodes) Postsynaptic endosome network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zdhhc2	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (380 aa)
	LOC103477863	RAB5A, member RAS oncogene family, b. (216 aa)
	ABHD17B	Abhydrolase domain containing 17B. (91 aa)
	LOC103463721	RAB11B, member RAS oncogene family, b. (218 aa)
	LOC103463719	RAB11B, member RAS oncogene family, a. (280 aa)
	ENSPREP00000009603	RAB5A, member RAS oncogene family, a. (57 aa)
	LOC103460107	RAB11a, member RAS oncogene family. (215 aa)
	LOC103463617	Abhydrolase domain containing 17A. (319 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC103479270	Peptidase_S9 domain-containing protein. (359 aa)
	LOC103479314	Uncharacterized protein. (220 aa)
	LOC103477555	RAB11a, member RAS oncogene family, like. (216 aa)
	pick1	Protein interacting with prkca 1. (409 aa)
	ENSPREP00000029685	Syntaxin 12. (256 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460107	LOC103477863	ENSPREP00000014136	ENSPREP00000005592	RAB11a, member RAS oncogene family.	RAB5A, member RAS oncogene family, b.	0.419
LOC103460107	rab5c	ENSPREP00000014136	ENSPREP00000015017	RAB11a, member RAS oncogene family.	RAB5C, member RAS oncogene family.	0.418
LOC103463719	LOC103477863	ENSPREP00000009360	ENSPREP00000005592	RAB11B, member RAS oncogene family, a.	RAB5A, member RAS oncogene family, b.	0.420
LOC103463719	rab5c	ENSPREP00000009360	ENSPREP00000015017	RAB11B, member RAS oncogene family, a.	RAB5C, member RAS oncogene family.	0.421
LOC103463721	LOC103477863	ENSPREP00000009307	ENSPREP00000005592	RAB11B, member RAS oncogene family, b.	RAB5A, member RAS oncogene family, b.	0.419
LOC103463721	rab5c	ENSPREP00000009307	ENSPREP00000015017	RAB11B, member RAS oncogene family, b.	RAB5C, member RAS oncogene family.	0.419
LOC103477555	LOC103477863	ENSPREP00000025659	ENSPREP00000005592	RAB11a, member RAS oncogene family, like.	RAB5A, member RAS oncogene family, b.	0.420
LOC103477555	rab5c	ENSPREP00000025659	ENSPREP00000015017	RAB11a, member RAS oncogene family, like.	RAB5C, member RAS oncogene family.	0.420
LOC103477863	LOC103460107	ENSPREP00000005592	ENSPREP00000014136	RAB5A, member RAS oncogene family, b.	RAB11a, member RAS oncogene family.	0.419
LOC103477863	LOC103463719	ENSPREP00000005592	ENSPREP00000009360	RAB5A, member RAS oncogene family, b.	RAB11B, member RAS oncogene family, a.	0.420
LOC103477863	LOC103463721	ENSPREP00000005592	ENSPREP00000009307	RAB5A, member RAS oncogene family, b.	RAB11B, member RAS oncogene family, b.	0.419
LOC103477863	LOC103477555	ENSPREP00000005592	ENSPREP00000025659	RAB5A, member RAS oncogene family, b.	RAB11a, member RAS oncogene family, like.	0.420
LOC103477863	LOC103479314	ENSPREP00000005592	ENSPREP00000021098	RAB5A, member RAS oncogene family, b.	Uncharacterized protein.	0.421
LOC103479314	LOC103477863	ENSPREP00000021098	ENSPREP00000005592	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.421
LOC103479314	rab5c	ENSPREP00000021098	ENSPREP00000015017	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.422
rab5c	LOC103460107	ENSPREP00000015017	ENSPREP00000014136	RAB5C, member RAS oncogene family.	RAB11a, member RAS oncogene family.	0.418
rab5c	LOC103463719	ENSPREP00000015017	ENSPREP00000009360	RAB5C, member RAS oncogene family.	RAB11B, member RAS oncogene family, a.	0.421
rab5c	LOC103463721	ENSPREP00000015017	ENSPREP00000009307	RAB5C, member RAS oncogene family.	RAB11B, member RAS oncogene family, b.	0.419
rab5c	LOC103477555	ENSPREP00000015017	ENSPREP00000025659	RAB5C, member RAS oncogene family.	RAB11a, member RAS oncogene family, like.	0.420
rab5c	LOC103479314	ENSPREP00000015017	ENSPREP00000021098	RAB5C, member RAS oncogene family.	Uncharacterized protein.	0.422