(5 nodes) Retinoid X receptor/HNF4 network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103456526	Hepatocyte nuclear factor 4, gamma. (549 aa)
	RXRB	Retinoid X receptor beta. (417 aa)
	LOC103478548	Retinoid x receptor, beta b. (412 aa)
	Rxra	Retinoid X receptor, alpha a. (410 aa)
	LOC103463575	Uncharacterized protein. (438 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103463575	RXRB	ENSPREP00000016159	ENSPREP00000009524	Uncharacterized protein.	Retinoid X receptor beta.	0.905
LOC103463575	Rxra	ENSPREP00000016159	ENSPREP00000032811	Uncharacterized protein.	Retinoid X receptor, alpha a.	0.907
RXRB	LOC103463575	ENSPREP00000009524	ENSPREP00000016159	Retinoid X receptor beta.	Uncharacterized protein.	0.905
RXRB	Rxra	ENSPREP00000009524	ENSPREP00000032811	Retinoid X receptor beta.	Retinoid X receptor, alpha a.	0.906
Rxra	LOC103463575	ENSPREP00000032811	ENSPREP00000016159	Retinoid X receptor, alpha a.	Uncharacterized protein.	0.907
Rxra	RXRB	ENSPREP00000032811	ENSPREP00000009524	Retinoid X receptor, alpha a.	Retinoid X receptor beta.	0.906