(146 nodes) Zinc finger, FYVE/PHD-type network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103457275	DNA (cytosine-5-)-methyltransferase 3 alpha a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (681 aa)
	LOC103462451	Tripartite motif containing 66. (1215 aa)
	LOC103475821	D4, zinc and double PHD fingers family 2. (399 aa)
	ing1	Inhibitor of growth protein. (304 aa)
	sytl5	Synaptotagmin-like 5. (751 aa)
	phf3	PHD finger protein 3. (1640 aa)
	LOC103465581	Zinc finger, MYND-type containing 8. (1166 aa)
	dido1	Death inducer-obliterator 1. (2464 aa)
	phf6	PHD finger protein 6. (365 aa)
	KMT2A	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (3484 aa)
	kdm7a	Lysine (K)-specific demethylase 7Ab. (560 aa)
	Kmt2e	Lysine (K)-specific methyltransferase 2E. (602 aa)
	phf8	PHD finger protein 8. (869 aa)
	LOC103470449	Lysine (K)-specific demethylase 2Aa. (1204 aa)
	cxxc1	CXXC finger protein 1b. (569 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (425 aa)
	ENSPREP00000031730	Uncharacterized protein. (290 aa)
	kmt2d	Lysine (K)-specific methyltransferase 2D. (3999 aa)
	phf21a	PHD finger protein 21Ab. (783 aa)
	ing5	Inhibitor of growth protein. (223 aa)
	baz2b	Bromodomain adjacent to zinc finger domain, 2Ba. (2408 aa)
	LOC103468552	SP110 nuclear body protein, tandem duplicate 1. (606 aa)
	kdm4a	Lysine (K)-specific demethylase 4A, genome duplicate a. (1080 aa)
	LOC103461926	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (562 aa)
	LOC103472707	Pygopus homolog 2 (Drosophila). (588 aa)
	zmynd11	Zinc finger, MYND-type containing 11. (663 aa)
	ZFYVE1	Uncharacterized protein. (783 aa)
	phrf1	Uncharacterized protein. (1719 aa)
	LOC103472762	Ash1 (absent, small, or homeotic)-like (Drosophila). (2870 aa)
	rag2	Recombination activating gene 2. (533 aa)
	ing3	Inhibitor of growth protein. (418 aa)
	kat6a	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2240 aa)
	plekhf2	Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (245 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1647 aa)
	phf1	PHD finger protein 1. (546 aa)
	zfyve9	Zinc finger, FYVE domain containing 9a. (1159 aa)
	jade3	Jade family PHD finger 3. (781 aa)
	ENSPREP00000025349	Uncharacterized protein. (680 aa)
	pikfyve	Phosphoinositide kinase, FYVE finger containing. (2073 aa)
	rbsn	Rabenosyn, RAB effector. (776 aa)
	LOC103479840	FYVE and coiled-coil domain containing 1b. (1464 aa)
	LOC103478201	Spire-type actin nucleation factor 1b. (804 aa)
	phf19	PHD finger protein 19. (546 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1303 aa)
	LOC103468408	Uncharacterized protein. (226 aa)
	LOC103468407	Uncharacterized protein. (256 aa)
	dpf2	Uncharacterized protein. (405 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1690 aa)
	mtmr3	Myotubularin related protein 3. (1221 aa)
	LOC103473219	Zinc finger, FYVE domain containing 16. (1393 aa)
	LOC103468399	Bromodomain PHD finger transcription factor. (3299 aa)
	Mllt10	Uncharacterized protein. (358 aa)
	zfyve28	Zinc finger, FYVE domain containing 28. (931 aa)
	phf12	PHD finger protein 12b. (1007 aa)
	LOC103476346	Remodeling and spacing factor 1b, tandem duplicate 1. (1987 aa)
	myrip	Myosin VIIA and Rab interacting protein. (1039 aa)
	chd5	Uncharacterized protein. (1804 aa)
	uhrf2	Uncharacterized protein. (581 aa)
	ENSPREP00000020782	Uncharacterized protein. (501 aa)
	phf23	PHD finger protein 23b. (319 aa)
	LOC103479813	Si:ch211-106h4.9. (986 aa)
	LOC103465305	Lysine (K)-specific demethylase 5Ba. (1482 aa)
	LOC103457933	Zinc finger, FYVE domain containing 1. (776 aa)
	LOC103457937	D4, zinc and double PHD fingers, family 3. (415 aa)
	rufy3	RUN and FYVE domain containing 3. (660 aa)
	LOC103459587	Uncharacterized protein. (934 aa)
	bsn	Uncharacterized protein. (4180 aa)
	ENSPREP00000019088	PHD-type domain-containing protein. (408 aa)
	phf14	PHD finger protein 14. (937 aa)
	fgd1	FYVE, RhoGEF and PH domain containing 1. (432 aa)
	LOC103460221	CXXC finger protein 1a. (599 aa)
	fbxl19	Uncharacterized protein. (558 aa)
	nsd3	Nuclear receptor binding SET domain protein 3. (1621 aa)
	ubr7	Ubiquitin protein ligase E3 component n-recognin 7. (381 aa)
	LOC103473724	Lysine (K)-specific demethylase 2Bb. (1401 aa)
	LOC103473722	Ring finger protein 34b. (365 aa)
	chd4	Uncharacterized protein. (1981 aa)
	LOC103468987	Uncharacterized protein. (1581 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (1830 aa)
	fyco1	FYVE and coiled-coil domain containing 1a. (1497 aa)
	Kmt2c	Uncharacterized protein. (741 aa)
	ing4	Inhibitor of growth protein. (249 aa)
	LOC103481063	Melanophilin a. (571 aa)
	LOC103470611	Ring finger protein 34a. (520 aa)
	LOC103470607	Lysine (K)-specific demethylase 2Ba. (778 aa)
	ENSPREP00000015423	FYVE domain-containing protein. (73 aa)
	phf10	PHD finger protein 10. (487 aa)
	rufy2	RUN and FYVE domain containing 2. (711 aa)
	rims1	Regulating synaptic membrane exocytosis 1a. (1422 aa)
	brpf1	Uncharacterized protein. (1285 aa)
	zfyve26	Zinc finger, FYVE domain containing 26. (2556 aa)
	trim33	Tripartite motif containing 33. (1223 aa)
	LOC103467571	FYVE, RhoGEF and PH domain containing 3. (621 aa)
	LOC103467001	Bromodomain and PHD finger containing, 3b. (1207 aa)
	LOC103459505	Uncharacterized protein. (1042 aa)
	kdm5a	Lysine (K)-specific demethylase 5A. (1734 aa)
	LOC103479142	Lysine (K)-specific demethylase 4A, genome duplicate b. (1178 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (1144 aa)
	ENSPREP00000012477	Uncharacterized protein. (249 aa)
	brd1	Bromodomain containing 1a. (1244 aa)
	ENSPREP00000012054	Uncharacterized protein. (423 aa)
	uhrf1	Ubiquitin-like with PHD and ring finger domains 1. (784 aa)
	LOC103463436	Lysine (K)-specific demethylase 4B. (1212 aa)
	mtf2	Metal response element binding transcription factor 2. (622 aa)
	Sytl3	RabBD domain-containing protein. (167 aa)
	LOC103474846	Si:ch211-11n16.2. (655 aa)
	dpf1	D4, zinc and double PHD fingers family 1. (437 aa)
	MTMR4	Myotubularin related protein 4. (1171 aa)
	LOC103467608	Uncharacterized protein. (3132 aa)
	zmynd8	Protein kinase C binding protein 1, like. (1150 aa)
	tcf19	Transcription factor 19 (SC1), like. (558 aa)
	LOC103472367	Spire-type actin nucleation factor 1a. (775 aa)
	PHF21B	PHD finger protein 21B. (596 aa)
	LOC103460735	Uncharacterized protein. (1087 aa)
	LOC103458261	Nuclear receptor binding SET domain protein 2. (472 aa)
	ints12	Integrator complex subunit 12. (478 aa)
	jade1	Jade family PHD finger 1. (977 aa)
	LOC103471190	Nuclear receptor binding SET domain protein 1a. (2016 aa)
	LOC103460020	Nuclear receptor binding SET domain protein 1b. (1315 aa)
	LOC103471126	RUN and FYVE domain containing 1. (717 aa)
	jade2	Jade family PHD finger 2. (863 aa)
	LOC103464494	Bromodomain and PHD finger containing, 3a. (1249 aa)
	atrx	ATRX chromatin remodeler. (2188 aa)
	ing2	Inhibitor of growth protein. (281 aa)
	LOC103465723	Uncharacterized protein. (581 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (765 aa)
	LOC103479582	Lysine (K)-specific methyltransferase 2Cb. (4978 aa)
	MLLT6	MLLT6, PHD finger containing. (1067 aa)
	baz1a	Bromodomain adjacent to zinc finger domain, 1A. (1068 aa)
	wdfy2	WD repeat and FYVE domain containing 2. (377 aa)
	kmt2b	Lysine (K)-specific methyltransferase 2Bb. (3857 aa)
	g2e3	G2/M-phase specific E3 ubiquitin protein ligase. (739 aa)
	spire2	Spire-type actin nucleation factor 2. (773 aa)
	kat6b	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2114 aa)
	wdfy3	WD repeat and FYVE domain containing 3. (3545 aa)
	rffl	Ring finger and FYVE-like domain containing E3 ubiquitin protein ligase. (342 aa)
	kdm5c	Lysine (K)-specific demethylase 5C. (1580 aa)
	aire	Autoimmune regulator. (496 aa)
	pclo	Piccolo presynaptic cytomatrix protein a. (3491 aa)
	phf13	PHD finger protein 13. (326 aa)
	ENSPREP00000002127	RabBD domain-containing protein. (192 aa)
	LOC103467750	Lysine (K)-specific demethylase 5Bb. (1430 aa)
	LOC103472838	Chromodomain helicase DNA binding protein 4a. (1967 aa)
	phf24	PHD finger protein 24. (402 aa)
	zfyve27	Zinc finger, FYVE domain containing 27. (418 aa)
	BPTF	Bromodomain PHD finger transcription factor. (2955 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	LOC103472762	ENSPREP00000000300	ENSPREP00000028240	Bromodomain PHD finger transcription factor.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.589
BPTF	LOC103476346	ENSPREP00000000300	ENSPREP00000021796	Bromodomain PHD finger transcription factor.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.667
BPTF	atrx	ENSPREP00000000300	ENSPREP00000006575	Bromodomain PHD finger transcription factor.	ATRX chromatin remodeler.	0.569
BPTF	phf3	ENSPREP00000000300	ENSPREP00000033264	Bromodomain PHD finger transcription factor.	PHD finger protein 3.	0.576
ENSPREP00000012054	LOC103472838	ENSPREP00000012054	ENSPREP00000001767	Uncharacterized protein.	Chromodomain helicase DNA binding protein 4a.	0.414
ENSPREP00000012054	PHF21B	ENSPREP00000012054	ENSPREP00000009746	Uncharacterized protein.	PHD finger protein 21B.	0.414
ENSPREP00000012054	aire	ENSPREP00000012054	ENSPREP00000003639	Uncharacterized protein.	Autoimmune regulator.	0.414
ENSPREP00000012054	atrx	ENSPREP00000012054	ENSPREP00000006575	Uncharacterized protein.	ATRX chromatin remodeler.	0.425
ENSPREP00000012054	chd3	ENSPREP00000012054	ENSPREP00000016390	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.414
ENSPREP00000012054	chd4	ENSPREP00000012054	ENSPREP00000016795	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSPREP00000012054	chd5	ENSPREP00000012054	ENSPREP00000021169	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSPREP00000012054	phf21a	ENSPREP00000012054	ENSPREP00000030809	Uncharacterized protein.	PHD finger protein 21Ab.	0.416
ENSPREP00000012054	shprh	ENSPREP00000012054	ENSPREP00000023572	Uncharacterized protein.	SNF2 histone linker PHD RING helicase.	0.420
ENSPREP00000015423	LOC103473219	ENSPREP00000015423	ENSPREP00000023134	FYVE domain-containing protein.	Zinc finger, FYVE domain containing 16.	0.900
ENSPREP00000015423	zfyve9	ENSPREP00000015423	ENSPREP00000026344	FYVE domain-containing protein.	Zinc finger, FYVE domain containing 9a.	0.900
ENSPREP00000025349	kdm7a	ENSPREP00000025349	ENSPREP00000032691	Uncharacterized protein.	Lysine (K)-specific demethylase 7Ab.	0.704
KMT2A	Kmt2c	ENSPREP00000032731	ENSPREP00000015908	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.539
KMT2A	Kmt2e	ENSPREP00000032731	ENSPREP00000032668	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Lysine (K)-specific methyltransferase 2E.	0.494
KMT2A	LOC103472762	ENSPREP00000032731	ENSPREP00000028240	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.560
KMT2A	LOC103479582	ENSPREP00000032731	ENSPREP00000005659	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Lysine (K)-specific methyltransferase 2Cb.	0.539