(29 nodes) Poly(ADP-ribose) polymerase, catalytic domain network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103459238	Poly [ADP-ribose] polymerase. (306 aa)
	LOC103466215	Poly (ADP-ribose) polymerase family, member 12a. (703 aa)
	LOC103466217	Poly (ADP-ribose) polymerase family, member 12a. (697 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
	parp2	Poly [ADP-ribose] polymerase. (647 aa)
	parp16	Poly [ADP-ribose] polymerase. (316 aa)
	LOC103459239	Poly [ADP-ribose] polymerase. (299 aa)
	PARP11	Poly [ADP-ribose] polymerase. (304 aa)
	LOC103475947	Poly [ADP-ribose] polymerase. (723 aa)
	LOC103475948	Poly [ADP-ribose] polymerase. (791 aa)
	ENSPREP00000005088	Poly [ADP-ribose] polymerase. (323 aa)
	ENSPREP00000007685	PARP catalytic domain-containing protein. (217 aa)
	ENSPREP00000007707	Grass carp reovirus (GCRV)-induced gene 2p. (160 aa)
	parp6	Poly [ADP-ribose] polymerase. (642 aa)
	LOC103473565	Poly [ADP-ribose] polymerase. (1285 aa)
	ENSPREP00000010946	Poly [ADP-ribose] polymerase. (303 aa)
	LOC103480296	Poly [ADP-ribose] polymerase. (1590 aa)
	parp3	Poly [ADP-ribose] polymerase. (522 aa)
	ENSPREP00000020250	PARP catalytic domain-containing protein. (158 aa)
	LOC103459299	Uncharacterized protein. (614 aa)
	LOC103469721	Poly [ADP-ribose] polymerase. (1263 aa)
	ENSPREP00000028501	Poly [ADP-ribose] polymerase. (672 aa)
	ENSPREP00000028349	Poly [ADP-ribose] polymerase. (720 aa)
	LOC103461817	Uncharacterized protein. (797 aa)
	ENSPREP00000027738	Poly [ADP-ribose] polymerase. (685 aa)
	ENSPREP00000025444	Poly [ADP-ribose] polymerase. (1527 aa)
	TIPARP	TCDD inducible poly(ADP-ribose) polymerase. (701 aa)
	ENSPREP00000024086	Poly [ADP-ribose] polymerase. (305 aa)
	LOC103466421	Poly (ADP-ribose) polymerase family, member 6b. (492 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000024086	parp1	ENSPREP00000024086	ENSPREP00000001596	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.418
ENSPREP00000024086	parp16	ENSPREP00000024086	ENSPREP00000023355	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.471
ENSPREP00000024086	parp2	ENSPREP00000024086	ENSPREP00000002153	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.578
ENSPREP00000024086	parp3	ENSPREP00000024086	ENSPREP00000013935	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.523
ENSPREP00000025444	LOC103461817	ENSPREP00000025444	ENSPREP00000028279	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.448
ENSPREP00000028349	LOC103461817	ENSPREP00000028349	ENSPREP00000028279	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.494
ENSPREP00000028501	LOC103461817	ENSPREP00000028501	ENSPREP00000028279	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.491
LOC103461817	ENSPREP00000025444	ENSPREP00000028279	ENSPREP00000025444	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.448
LOC103461817	ENSPREP00000028349	ENSPREP00000028279	ENSPREP00000028349	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.494
LOC103461817	ENSPREP00000028501	ENSPREP00000028279	ENSPREP00000028501	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.491
LOC103461817	parp3	ENSPREP00000028279	ENSPREP00000013935	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.455
PARP11	parp1	ENSPREP00000004187	ENSPREP00000001596	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.440
PARP11	parp16	ENSPREP00000004187	ENSPREP00000023355	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.533
PARP11	parp2	ENSPREP00000004187	ENSPREP00000002153	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.416
PARP11	parp3	ENSPREP00000004187	ENSPREP00000013935	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.441
parp1	ENSPREP00000024086	ENSPREP00000001596	ENSPREP00000024086	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Poly [ADP-ribose] polymerase.	0.418
parp1	PARP11	ENSPREP00000001596	ENSPREP00000004187	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Poly [ADP-ribose] polymerase.	0.440
parp1	parp2	ENSPREP00000001596	ENSPREP00000002153	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Poly [ADP-ribose] polymerase.	0.809
parp16	ENSPREP00000024086	ENSPREP00000023355	ENSPREP00000024086	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.471
parp16	PARP11	ENSPREP00000023355	ENSPREP00000004187	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.533