(7 nodes) Dedicator of cytokinesis C/D, N-terminal network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103474130	Dedicator of cytokinesis 9b; Belongs to the DOCK family. (2070 aa)
	LOC103468721	Dedicator of cytokinesis 6; Belongs to the DOCK family. (2119 aa)
	DOCK9	Dedicator of cytokinesis 9; Belongs to the DOCK family. (2125 aa)
	dock11	Dedicator of cytokinesis 11; Belongs to the DOCK family. (2003 aa)
	dock10	Dedicator of cytokinesis 10; Belongs to the DOCK family. (2188 aa)
	dock7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2205 aa)
	dock8	Dedicator of cytokinesis 8; Belongs to the DOCK family. (2122 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DOCK9	dock10	ENSPREP00000010160	ENSPREP00000033413	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.406
LOC103474130	dock10	ENSPREP00000020606	ENSPREP00000033413	Dedicator of cytokinesis 9b; Belongs to the DOCK family.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.408
dock10	DOCK9	ENSPREP00000033413	ENSPREP00000010160	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Dedicator of cytokinesis 9; Belongs to the DOCK family.	0.406
dock10	LOC103474130	ENSPREP00000033413	ENSPREP00000020606	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Dedicator of cytokinesis 9b; Belongs to the DOCK family.	0.408
dock10	dock11	ENSPREP00000033413	ENSPREP00000002649	Dedicator of cytokinesis 10; Belongs to the DOCK family.	Dedicator of cytokinesis 11; Belongs to the DOCK family.	0.412
dock11	dock10	ENSPREP00000002649	ENSPREP00000033413	Dedicator of cytokinesis 11; Belongs to the DOCK family.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.412