(19 nodes) Basigin-like network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103474608	Down syndrome cell adhesion molecule like 1. (2091 aa)
	ncam1	Neural cell adhesion molecule 1b. (1226 aa)
	hmcn2	Hemicentin 2. (4080 aa)
	ENSPREP00000018507	Ig-like domain-containing protein. (187 aa)
	nexn	Nexilin (F actin binding protein). (861 aa)
	LOC103474387	Down syndrome cell adhesion molecule b. (2070 aa)
	ENSPREP00000027250	Ig-like domain-containing protein. (287 aa)
	ENSPREP00000027384	Uncharacterized protein. (531 aa)
	ENSPREP00000027407	Uncharacterized protein. (603 aa)
	ENSPREP00000000015	Ig-like domain-containing protein. (192 aa)
	LOC103476139	Down syndrome cell adhesion molecule a. (2028 aa)
	musk	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (623 aa)
	myot	Myotilin. (462 aa)
	fstl4	Follistatin-like 4. (780 aa)
	ENSPREP00000028643	Uncharacterized protein. (199 aa)
	Adamtsl1	Uncharacterized protein. (650 aa)
	ENSPREP00000013954	Uncharacterized protein. (326 aa)
	emb	Embigin. (302 aa)
	DSCAML1	DS cell adhesion molecule like 1. (2023 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSCAML1	LOC103476139	ENSPREP00000031898	ENSPREP00000015397	DS cell adhesion molecule like 1.	Down syndrome cell adhesion molecule a.	0.413
ENSPREP00000027250	ENSPREP00000027384	ENSPREP00000027250	ENSPREP00000027384	Ig-like domain-containing protein.	Uncharacterized protein.	0.697
ENSPREP00000027250	ENSPREP00000027407	ENSPREP00000027250	ENSPREP00000027407	Ig-like domain-containing protein.	Uncharacterized protein.	0.899
ENSPREP00000027384	ENSPREP00000027250	ENSPREP00000027384	ENSPREP00000027250	Uncharacterized protein.	Ig-like domain-containing protein.	0.697
ENSPREP00000027407	ENSPREP00000027250	ENSPREP00000027407	ENSPREP00000027250	Uncharacterized protein.	Ig-like domain-containing protein.	0.899
LOC103474608	LOC103476139	ENSPREP00000033563	ENSPREP00000015397	Down syndrome cell adhesion molecule like 1.	Down syndrome cell adhesion molecule a.	0.413
LOC103476139	DSCAML1	ENSPREP00000015397	ENSPREP00000031898	Down syndrome cell adhesion molecule a.	DS cell adhesion molecule like 1.	0.413
LOC103476139	LOC103474608	ENSPREP00000015397	ENSPREP00000033563	Down syndrome cell adhesion molecule a.	Down syndrome cell adhesion molecule like 1.	0.413