(20 nodes) Cohesin Loading onto Chromatin network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pds5a	PDS5 cohesin associated factor A. (1288 aa)
	smc1a	Structural maintenance of chromosomes protein. (1231 aa)
	LOC103475746	Stromal antigen 2a. (1295 aa)
	LOC103470908	Stromal antigen 2b. (1272 aa)
	nipbl	Nipped-B protein. (2355 aa)
	LOC103481872	WAPL cohesin release factor b. (1237 aa)
	LOC103473783	Nipped-B protein. (2642 aa)
	Stag3	SCD domain-containing protein. (116 aa)
	ENSPREP00000020767	Uncharacterized protein. (110 aa)
	LOC103478347	RAD21 cohesin complex component a. (637 aa)
	stag1	Stromal antigen 1a. (1260 aa)
	pds5b	PDS5 cohesin associated factor B. (1411 aa)
	LOC103476704	WAPL cohesin release factor a. (1179 aa)
	mau2	MAU2 sister chromatid cohesion factor. (598 aa)
	LOC103478963	Si:ch211-269e2.1. (1097 aa)
	LOC103465732	Structural maintenance of chromosomes protein. (1250 aa)
	LOC103467726	RAD21 cohesin complex component like 1. (539 aa)
	LOC103472890	RAD21 cohesin complex component b. (644 aa)
	smc3	Structural maintenance of chromosomes protein. (1225 aa)
	Rbm20	Matrin-type domain-containing protein. (439 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000020767	LOC103465732	ENSPREP00000020767	ENSPREP00000005604	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.894
ENSPREP00000020767	LOC103467726	ENSPREP00000020767	ENSPREP00000003268	Uncharacterized protein.	RAD21 cohesin complex component like 1.	0.819
ENSPREP00000020767	LOC103470908	ENSPREP00000020767	ENSPREP00000031143	Uncharacterized protein.	Stromal antigen 2b.	0.801
ENSPREP00000020767	LOC103472890	ENSPREP00000020767	ENSPREP00000002991	Uncharacterized protein.	RAD21 cohesin complex component b.	0.819
ENSPREP00000020767	LOC103473783	ENSPREP00000020767	ENSPREP00000020900	Uncharacterized protein.	Nipped-B protein.	0.899
ENSPREP00000020767	LOC103475746	ENSPREP00000020767	ENSPREP00000032038	Uncharacterized protein.	Stromal antigen 2a.	0.801
ENSPREP00000020767	LOC103476704	ENSPREP00000020767	ENSPREP00000013937	Uncharacterized protein.	WAPL cohesin release factor a.	0.743
ENSPREP00000020767	LOC103478347	ENSPREP00000020767	ENSPREP00000018269	Uncharacterized protein.	RAD21 cohesin complex component a.	0.819
ENSPREP00000020767	LOC103478963	ENSPREP00000020767	ENSPREP00000007814	Uncharacterized protein.	Si:ch211-269e2.1.	0.801
ENSPREP00000020767	LOC103481872	ENSPREP00000020767	ENSPREP00000022989	Uncharacterized protein.	WAPL cohesin release factor b.	0.743
ENSPREP00000020767	Rbm20	ENSPREP00000020767	ENSPREP00000000385	Uncharacterized protein.	Matrin-type domain-containing protein.	0.904
ENSPREP00000020767	Stag3	ENSPREP00000020767	ENSPREP00000020829	Uncharacterized protein.	SCD domain-containing protein.	0.801
ENSPREP00000020767	mau2	ENSPREP00000020767	ENSPREP00000010456	Uncharacterized protein.	MAU2 sister chromatid cohesion factor.	0.886
ENSPREP00000020767	pds5a	ENSPREP00000020767	ENSPREP00000011296	Uncharacterized protein.	PDS5 cohesin associated factor A.	0.846
ENSPREP00000020767	pds5b	ENSPREP00000020767	ENSPREP00000015893	Uncharacterized protein.	PDS5 cohesin associated factor B.	0.846
ENSPREP00000020767	smc1a	ENSPREP00000020767	ENSPREP00000032043	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.894
ENSPREP00000020767	smc3	ENSPREP00000020767	ENSPREP00000000387	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.963
ENSPREP00000020767	stag1	ENSPREP00000020767	ENSPREP00000017319	Uncharacterized protein.	Stromal antigen 1a.	0.801
LOC103465732	ENSPREP00000020767	ENSPREP00000005604	ENSPREP00000020767	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.894
LOC103465732	LOC103467726	ENSPREP00000005604	ENSPREP00000003268	Structural maintenance of chromosomes protein.	RAD21 cohesin complex component like 1.	0.985