STRINGSTRING
parn parn ENSPREP00000000810 ENSPREP00000000810 ENSPREP00000000840 ENSPREP00000000840 LOC103472876 LOC103472876 ENSPREP00000000983 ENSPREP00000000983 cnot9 cnot9 pan2 pan2 pabpc4 pabpc4 eif4b eif4b LOC103460523 LOC103460523 LOC103480125 LOC103480125 cnot6l cnot6l LOC103471263 LOC103471263 eif4a3 eif4a3 CNOT2 CNOT2 eif4a2 eif4a2 cnot3 cnot3 cnot4 cnot4 TUT7 TUT7 ENSPREP00000013441 ENSPREP00000013441 Zcchc6 Zcchc6 paip1 paip1 LOC103471822 LOC103471822 LOC103472449 LOC103472449 lrrc27 lrrc27 cnot11 cnot11 cnot8 cnot8 ENSPREP00000022545 ENSPREP00000022545 LOC103467939 LOC103467939 cnot10 cnot10 cnot1 cnot1 LOC103476881 LOC103476881 pan3 pan3 tut1 tut1 pabpc1 pabpc1 LOC103466190 LOC103466190 LOC103470954 LOC103470954
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
parnPoly(A)-specific ribonuclease (deadenylation nuclease). (683 aa)
ENSPREP00000000810Uncharacterized protein. (142 aa)
ENSPREP00000000840Uncharacterized protein. (140 aa)
LOC103472876CCR4-NOT transcription complex, subunit 3b. (938 aa)
ENSPREP00000000983Not3 domain-containing protein. (459 aa)
cnot9CCR4-NOT transcription complex subunit 9. (299 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1211 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
eif4bEukaryotic translation initiation factor 4Bb. (639 aa)
LOC103460523Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (252 aa)
LOC103480125Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (390 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (555 aa)
LOC103471263CCR4-NOT transcription complex, subunit 6a. (550 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
CNOT2CCR4-NOT transcription complex subunit 2. (522 aa)
eif4a2Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (411 aa)
cnot3CCR4-NOT transcription complex, subunit 3a. (894 aa)
cnot4CCR4-NOT transcription complex, subunit 4a. (800 aa)
TUT7Terminal uridylyl transferase 7. (673 aa)
ENSPREP00000013441Uncharacterized protein. (138 aa)
Zcchc6Uncharacterized protein. (187 aa)
paip1Poly(A) binding protein interacting protein 1. (395 aa)
LOC103471822Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (215 aa)
LOC103472449Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
lrrc27Uncharacterized protein. (407 aa)
cnot11CCR4-NOT transcription complex, subunit 11. (445 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (285 aa)
ENSPREP00000022545PABC domain-containing protein. (143 aa)
LOC103467939Poly(A) binding protein, cytoplasmic 1-like. (412 aa)
cnot10CCR4-NOT transcription complex, subunit 10. (732 aa)
cnot1CCR4-NOT transcription complex, subunit 1. (2246 aa)
LOC103476881Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (792 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (777 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (639 aa)
LOC103466190CCR4-NOT transcription complex, subunit 2. (660 aa)
LOC103470954CCR4-NOT transcription complex, subunit 7. (286 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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