STRINGSTRING
papolg papolg LOC103474154 LOC103474154 SRSF11 SRSF11 cpsf2 cpsf2 u2af2 u2af2 thoc1 thoc1 sympk sympk srsf7 srsf7 NCBP1 NCBP1 fyttd1 fyttd1 eif4a3 eif4a3 srsf11 srsf11 CPSF3 CPSF3 cpsf6 cpsf6 slu7 slu7 SRSF3 SRSF3 srsf2 srsf2 srrm1 srrm1 ENSPREP00000029428 ENSPREP00000029428 LOC103465457 LOC103465457 chtop chtop ENSPREP00000030553 ENSPREP00000030553 cstf1 cstf1 ncbp2 ncbp2 thoc2 thoc2 PABPN1L PABPN1L LOC103459809 LOC103459809 CPSF7 CPSF7 dhx38 dhx38 LOC103464577 LOC103464577 cdc40 cdc40 thoc5 thoc5 rnps1 rnps1 Pcf11 Pcf11 nudt21 nudt21 WDR33 WDR33 ENSPREP00000001423 ENSPREP00000001423 ENSPREP00000001364 ENSPREP00000001364 Srek1 Srek1 ENSPREP00000028963 ENSPREP00000028963 thoc7 thoc7 cpsf4 cpsf4 srsf5 srsf5 clp1 clp1 rbm8a rbm8a ddx39a ddx39a LOC103475485 LOC103475485 poldip3 poldip3 cpsf1 cpsf1 LOC103469127 LOC103469127 thoc3 thoc3 LOC103457156 LOC103457156 DDX39A DDX39A cstf3 cstf3 magoh magoh LOC103473757 LOC103473757 LOC103469439 LOC103469439 LOC103474499 LOC103474499 ENSPREP00000018529 ENSPREP00000018529 thoc6 thoc6 ENSPREP00000018077 ENSPREP00000018077 Upf3b Upf3b casc3 casc3 cstf2 cstf2 pabpn1 pabpn1 LOC103457348 LOC103457348 LOC103473063 LOC103473063
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
papolgPoly(A) polymerase gamma. (847 aa)
LOC103474154Serine and arginine rich splicing factor 1a. (251 aa)
SRSF11Serine and arginine rich splicing factor 11. (453 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
thoc1THO complex 1. (654 aa)
sympkSymplekin. (1220 aa)
srsf7Serine and arginine rich splicing factor 7b. (236 aa)
NCBP1Nuclear cap binding protein subunit 1. (797 aa)
fyttd1Uncharacterized protein. (321 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
srsf11Serine and arginine rich splicing factor 11. (459 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (653 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
slu7SLU7 homolog, splicing factor. (560 aa)
SRSF3Serine and arginine rich splicing factor 3. (125 aa)
srsf2Serine and arginine rich splicing factor 2a. (236 aa)
srrm1Serine/arginine repetitive matrix 1. (839 aa)
ENSPREP00000029428RRM domain-containing protein. (125 aa)
LOC103465457Zinc finger CCCH-type containing 11A. (833 aa)
chtopChromatin target of PRMT1a. (196 aa)
ENSPREP00000030553Serine and arginine rich splicing factor 7a. (149 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (194 aa)
thoc2THO complex 2. (1557 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (231 aa)
LOC103459809U2 small nuclear RNA auxiliary factor 1. (235 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (451 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1229 aa)
LOC103464577RRM domain-containing protein. (160 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
thoc5THO complex 5. (683 aa)
rnps1RNA binding protein S1, serine-rich domain. (280 aa)
Pcf11CID domain-containing protein. (87 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
WDR33WD repeat domain 33. (893 aa)
ENSPREP00000001423Serine and arginine rich splicing factor 6a. (149 aa)
ENSPREP00000001364RRM domain-containing protein. (246 aa)
Srek1Splicing regulatory glutamine/lysine-rich protein 1. (171 aa)
ENSPREP00000028963SAP domain containing ribonucleoprotein. (222 aa)
thoc7THO complex 7. (203 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (262 aa)
srsf5Serine and arginine rich splicing factor 5a. (317 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
ddx39aUncharacterized protein. (427 aa)
LOC103475485Uncharacterized protein. (248 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (494 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1471 aa)
LOC103469127Aly/REF export factor. (270 aa)
thoc3THO complex 3. (349 aa)
LOC103457156Cleavage and polyadenylation specific factor 3. (627 aa)
DDX39ADExD-box helicase 39A. (427 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
magohMago homolog, exon junction complex subunit. (149 aa)
LOC103473757Serine and arginine rich splicing factor 9. (251 aa)
LOC103469439U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (508 aa)
LOC103474499Uncharacterized protein. (228 aa)
ENSPREP00000018529FIP1 like 1b (S. cerevisiae). (435 aa)
thoc6THO complex 6. (352 aa)
ENSPREP00000018077Uncharacterized protein. (81 aa)
Upf3bUPF3B regulator of nonsense mediated mRNA decay. (149 aa)
casc3Casc3 exon junction complex subunit. (662 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (556 aa)
pabpn1Poly(A) binding protein, nuclear 1. (286 aa)
LOC103457348Serine and arginine rich splicing factor 5b. (301 aa)
LOC103473063Serine and arginine rich splicing factor 4. (352 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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