STRINGSTRING
rrn3 rrn3 LOC103472838 LOC103472838 LOC103460486 LOC103460486 tbpl2 tbpl2 polr1a polr1a aire aire cdk7 cdk7 polr1b polr1b twistnb twistnb LOC103480197 LOC103480197 ccnh ccnh gtf2h5 gtf2h5 mta3 mta3 POLR2E POLR2E LOC103471188 LOC103471188 LOC103463694 LOC103463694 polr2h polr2h polr1c polr1c taf1a taf1a ENSPREP00000012814 ENSPREP00000012814 polr1e polr1e ubtf ubtf tbp tbp chd3 chd3 chd4 chd4 LOC103470674 LOC103470674 LOC103460987 LOC103460987 mta1 mta1 gtf2h1 gtf2h1 chd5 chd5 taf1b taf1b mnat1 mnat1 LOC103481886 LOC103481886 ttf1 ttf1 polr2f polr2f LOC103479433 LOC103479433 LOC103475151 LOC103475151 ercc2 ercc2 gtf2h4 gtf2h4 znrd1 znrd1 taf1c taf1c gatad2b gatad2b gtf2h3 gtf2h3 ercc3 ercc3 ercc6 ercc6 ENSPREP00000031846 ENSPREP00000031846 rbbp4 rbbp4 RBBP7 RBBP7 polr2l polr2l
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rrn3RRN3 homolog, RNA polymerase I transcription factor. (610 aa)
LOC103472838Chromodomain helicase DNA binding protein 4a. (1967 aa)
LOC103460486Upstream binding transcription factor, like. (701 aa)
tbpl2Uncharacterized protein. (307 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1695 aa)
aireAutoimmune regulator. (496 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (387 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
twistnbUncharacterized protein. (369 aa)
LOC103480197GATA-type domain-containing protein. (406 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
mta3Metastasis associated 1 family, member 3. (699 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC103471188Germ cell nuclear acidic peptidase. (437 aa)
LOC103463694GATA zinc finger domain containing 2Ab. (591 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
polr1cRNA polymerase I and III subunit C. (346 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (417 aa)
ENSPREP00000012814Uncharacterized protein. (74 aa)
polr1eRNA polymerase I subunit E. (414 aa)
ubtfUpstream binding transcription factor. (736 aa)
tbpTATA box binding protein. (301 aa)
chd3Chromodomain helicase DNA binding protein 3. (1830 aa)
chd4Uncharacterized protein. (1981 aa)
LOC103470674General transcription factor IIH subunit. (420 aa)
LOC103460987Metastasis associated 1 family, member 2. (332 aa)
mta1Metastasis associated 1. (584 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
chd5Uncharacterized protein. (1804 aa)
taf1bTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (545 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC103481886Uncharacterized protein. (302 aa)
ttf1Uncharacterized protein. (540 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (98 aa)
LOC103479433Uncharacterized protein. (621 aa)
LOC103475151Uncharacterized protein. (340 aa)
ercc2Excision repair cross-complementation group 2. (655 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (434 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
taf1cWu:fj64h06. (921 aa)
gatad2bGATA zinc finger domain containing 2B. (589 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (277 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc6Excision repair cross-complementation group 6. (1402 aa)
ENSPREP00000031846Cyclin D binding myb-like transcription factor 1. (350 aa)
rbbp4Retinoblastoma binding protein 4. (424 aa)
RBBP7RB binding protein 7, chromatin remodeling factor. (422 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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