(5 nodes) Carboxyl transferase domain network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	acaca	Acetyl-CoA carboxylase alpha. (2251 aa)
	pccb	Propionyl-CoA carboxylase subunit beta. (561 aa)
	LOC103463128	Si:ch211-198n5.11. (534 aa)
	acacb	Acetyl-CoA carboxylase beta. (2054 aa)
	mccc2	Methylcrotonoyl-CoA carboxylase 2 (beta). (564 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103463128	acaca	ENSPREP00000033644	ENSPREP00000001848	Si:ch211-198n5.11.	Acetyl-CoA carboxylase alpha.	0.740
LOC103463128	acacb	ENSPREP00000033644	ENSPREP00000033271	Si:ch211-198n5.11.	Acetyl-CoA carboxylase beta.	0.740
LOC103463128	mccc2	ENSPREP00000033644	ENSPREP00000013194	Si:ch211-198n5.11.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.904
LOC103463128	pccb	ENSPREP00000033644	ENSPREP00000017427	Si:ch211-198n5.11.	Propionyl-CoA carboxylase subunit beta.	0.690
acaca	LOC103463128	ENSPREP00000001848	ENSPREP00000033644	Acetyl-CoA carboxylase alpha.	Si:ch211-198n5.11.	0.740
acaca	acacb	ENSPREP00000001848	ENSPREP00000033271	Acetyl-CoA carboxylase alpha.	Acetyl-CoA carboxylase beta.	0.901
acaca	mccc2	ENSPREP00000001848	ENSPREP00000013194	Acetyl-CoA carboxylase alpha.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.781
acaca	pccb	ENSPREP00000001848	ENSPREP00000017427	Acetyl-CoA carboxylase alpha.	Propionyl-CoA carboxylase subunit beta.	0.741
acacb	LOC103463128	ENSPREP00000033271	ENSPREP00000033644	Acetyl-CoA carboxylase beta.	Si:ch211-198n5.11.	0.740
acacb	acaca	ENSPREP00000033271	ENSPREP00000001848	Acetyl-CoA carboxylase beta.	Acetyl-CoA carboxylase alpha.	0.901
acacb	mccc2	ENSPREP00000033271	ENSPREP00000013194	Acetyl-CoA carboxylase beta.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.740
acacb	pccb	ENSPREP00000033271	ENSPREP00000017427	Acetyl-CoA carboxylase beta.	Propionyl-CoA carboxylase subunit beta.	0.741
mccc2	LOC103463128	ENSPREP00000013194	ENSPREP00000033644	Methylcrotonoyl-CoA carboxylase 2 (beta).	Si:ch211-198n5.11.	0.904
mccc2	acaca	ENSPREP00000013194	ENSPREP00000001848	Methylcrotonoyl-CoA carboxylase 2 (beta).	Acetyl-CoA carboxylase alpha.	0.781
mccc2	acacb	ENSPREP00000013194	ENSPREP00000033271	Methylcrotonoyl-CoA carboxylase 2 (beta).	Acetyl-CoA carboxylase beta.	0.740
mccc2	pccb	ENSPREP00000013194	ENSPREP00000017427	Methylcrotonoyl-CoA carboxylase 2 (beta).	Propionyl-CoA carboxylase subunit beta.	0.678
pccb	LOC103463128	ENSPREP00000017427	ENSPREP00000033644	Propionyl-CoA carboxylase subunit beta.	Si:ch211-198n5.11.	0.690
pccb	acaca	ENSPREP00000017427	ENSPREP00000001848	Propionyl-CoA carboxylase subunit beta.	Acetyl-CoA carboxylase alpha.	0.741
pccb	acacb	ENSPREP00000017427	ENSPREP00000033271	Propionyl-CoA carboxylase subunit beta.	Acetyl-CoA carboxylase beta.	0.741
pccb	mccc2	ENSPREP00000017427	ENSPREP00000013194	Propionyl-CoA carboxylase subunit beta.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.678