(8 nodes) Cytidylyltransferase-like network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pcyt1a	Phosphate cytidylyltransferase 1, choline, alpha a. (384 aa)
	nmnat2	Nicotinamide nucleotide adenylyltransferase 2. (307 aa)
	nmnat1	Nicotinamide-nucleotide adenylyltransferase. (285 aa)
	pcyt1b	Phosphate cytidylyltransferase 1, choline, beta a. (386 aa)
	LOC103479319	Nicotinamide-nucleotide adenylyltransferase. (265 aa)
	PCYT2	Phosphate cytidylyltransferase 2, ethanolamine. (408 aa)
	pcyt2	Phosphate cytidylyltransferase 2, ethanolamine. (405 aa)
	LOC103475428	Phosphate cytidylyltransferase 1, choline, beta b. (340 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103475428	pcyt1a	ENSPREP00000029438	ENSPREP00000020753	Phosphate cytidylyltransferase 1, choline, beta b.	Phosphate cytidylyltransferase 1, choline, alpha a.	0.928
LOC103475428	pcyt1b	ENSPREP00000029438	ENSPREP00000021247	Phosphate cytidylyltransferase 1, choline, beta b.	Phosphate cytidylyltransferase 1, choline, beta a.	0.901
LOC103479319	nmnat1	ENSPREP00000020926	ENSPREP00000023066	Nicotinamide-nucleotide adenylyltransferase.	Nicotinamide-nucleotide adenylyltransferase.	0.903
LOC103479319	nmnat2	ENSPREP00000020926	ENSPREP00000028650	Nicotinamide-nucleotide adenylyltransferase.	Nicotinamide nucleotide adenylyltransferase 2.	0.905
PCYT2	pcyt2	ENSPREP00000003081	ENSPREP00000000574	Phosphate cytidylyltransferase 2, ethanolamine.	Phosphate cytidylyltransferase 2, ethanolamine.	0.901
nmnat1	LOC103479319	ENSPREP00000023066	ENSPREP00000020926	Nicotinamide-nucleotide adenylyltransferase.	Nicotinamide-nucleotide adenylyltransferase.	0.903
nmnat1	nmnat2	ENSPREP00000023066	ENSPREP00000028650	Nicotinamide-nucleotide adenylyltransferase.	Nicotinamide nucleotide adenylyltransferase 2.	0.904
nmnat2	LOC103479319	ENSPREP00000028650	ENSPREP00000020926	Nicotinamide nucleotide adenylyltransferase 2.	Nicotinamide-nucleotide adenylyltransferase.	0.905
nmnat2	nmnat1	ENSPREP00000028650	ENSPREP00000023066	Nicotinamide nucleotide adenylyltransferase 2.	Nicotinamide-nucleotide adenylyltransferase.	0.904
pcyt1a	LOC103475428	ENSPREP00000020753	ENSPREP00000029438	Phosphate cytidylyltransferase 1, choline, alpha a.	Phosphate cytidylyltransferase 1, choline, beta b.	0.928
pcyt1a	pcyt1b	ENSPREP00000020753	ENSPREP00000021247	Phosphate cytidylyltransferase 1, choline, alpha a.	Phosphate cytidylyltransferase 1, choline, beta a.	0.928
pcyt1b	LOC103475428	ENSPREP00000021247	ENSPREP00000029438	Phosphate cytidylyltransferase 1, choline, beta a.	Phosphate cytidylyltransferase 1, choline, beta b.	0.901
pcyt1b	pcyt1a	ENSPREP00000021247	ENSPREP00000020753	Phosphate cytidylyltransferase 1, choline, beta a.	Phosphate cytidylyltransferase 1, choline, alpha a.	0.928
pcyt2	PCYT2	ENSPREP00000000574	ENSPREP00000003081	Phosphate cytidylyltransferase 2, ethanolamine.	Phosphate cytidylyltransferase 2, ethanolamine.	0.901