(7 nodes) (2023) A novel sorting signal for RNA packaging into small extracellular vesicles. network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103472843	Glyceraldehyde-3-phosphate dehydrogenase. (334 aa)
	anp32b	Acidic (leucine-rich) nuclear phosphoprotein 32 family, member B. (260 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	rab13	RAB13, member RAS oncogene family. (216 aa)
	actb	Uncharacterized protein. (375 aa)
	luc7l3	Uncharacterized protein. (438 aa)
	CD9	Tetraspanin. (210 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103472843	actb	ENSPREP00000001538	ENSPREP00000027111	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.639
LOC103472843	gapdh	ENSPREP00000001538	ENSPREP00000016134	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
actb	LOC103472843	ENSPREP00000027111	ENSPREP00000001538	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.639
actb	gapdh	ENSPREP00000027111	ENSPREP00000016134	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.634
gapdh	LOC103472843	ENSPREP00000016134	ENSPREP00000001538	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
gapdh	actb	ENSPREP00000016134	ENSPREP00000027111	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.634