29 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (745 aa)
	tbpl2	Uncharacterized protein. (307 aa)
	taf13	TATA-box binding protein associated factor 13. (188 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (319 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	Taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (159 aa)
	gtf2b	General transcription factor IIB. (318 aa)
	ENSPREP00000011339	TAF4 domain-containing protein. (249 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (896 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	tbp	TATA box binding protein. (301 aa)
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
	tbpl1	TBP-like 1. (187 aa)
	taf7l	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (383 aa)
	LOC103470674	General transcription factor IIH subunit. (420 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (550 aa)
	gtf2ird1	GTF2I repeat domain containing 1. (1013 aa)
	gtf2e1	General transcription factor IIE, polypeptide 1, alpha. (462 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	LOC103465090	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (852 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
	gtf2a1	General transcription factor IIA, 1. (393 aa)
	taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (243 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (599 aa)
	LOC103475759	Transcription initiation factor TFIID subunit. (1985 aa)
	taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000011339	LOC103465090	ENSPREP00000011339	ENSPREP00000024331	TAF4 domain-containing protein.	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.900
ENSPREP00000011339	LOC103470674	ENSPREP00000011339	ENSPREP00000017962	TAF4 domain-containing protein.	General transcription factor IIH subunit.	0.705
ENSPREP00000011339	LOC103475759	ENSPREP00000011339	ENSPREP00000032525	TAF4 domain-containing protein.	Transcription initiation factor TFIID subunit.	0.957
ENSPREP00000011339	Taf12	ENSPREP00000011339	ENSPREP00000007202	TAF4 domain-containing protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.957
ENSPREP00000011339	ccnh	ENSPREP00000011339	ENSPREP00000006353	TAF4 domain-containing protein.	Cyclin H; Belongs to the cyclin family.	0.715
ENSPREP00000011339	ercc3	ENSPREP00000011339	ENSPREP00000030919	TAF4 domain-containing protein.	Excision repair cross-complementation group 3.	0.705
ENSPREP00000011339	gtf2a1	ENSPREP00000011339	ENSPREP00000027319	TAF4 domain-containing protein.	General transcription factor IIA, 1.	0.752
ENSPREP00000011339	gtf2a2	ENSPREP00000011339	ENSPREP00000013132	TAF4 domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.850
ENSPREP00000011339	gtf2b	ENSPREP00000011339	ENSPREP00000011330	TAF4 domain-containing protein.	General transcription factor IIB.	0.807
ENSPREP00000011339	gtf2e1	ENSPREP00000011339	ENSPREP00000021965	TAF4 domain-containing protein.	General transcription factor IIE, polypeptide 1, alpha.	0.679
ENSPREP00000011339	gtf2e2	ENSPREP00000011339	ENSPREP00000015550	TAF4 domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.799
ENSPREP00000011339	gtf2f2	ENSPREP00000011339	ENSPREP00000030834	TAF4 domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.696
ENSPREP00000011339	gtf2h1	ENSPREP00000011339	ENSPREP00000019946	TAF4 domain-containing protein.	General transcription factor IIH, polypeptide 1.	0.705
ENSPREP00000011339	gtf2h5	ENSPREP00000011339	ENSPREP00000006463	TAF4 domain-containing protein.	General transcription factor IIH, polypeptide 5.	0.601
ENSPREP00000011339	mnat1	ENSPREP00000011339	ENSPREP00000022935	TAF4 domain-containing protein.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.705
ENSPREP00000011339	taf10	ENSPREP00000011339	ENSPREP00000025580	TAF4 domain-containing protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.936
ENSPREP00000011339	taf13	ENSPREP00000011339	ENSPREP00000005745	TAF4 domain-containing protein.	TATA-box binding protein associated factor 13.	0.935
ENSPREP00000011339	taf3	ENSPREP00000011339	ENSPREP00000011483	TAF4 domain-containing protein.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.903
ENSPREP00000011339	taf5	ENSPREP00000011339	ENSPREP00000000635	TAF4 domain-containing protein.	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.844
ENSPREP00000011339	taf5l	ENSPREP00000011339	ENSPREP00000032324	TAF4 domain-containing protein.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.844