(16 nodes) Transport of the SLBP independent Mature mRNA network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	nup155	Nucleoporin 155. (1346 aa)
	ahctf1	AT hook containing transcription factor 1. (1221 aa)
	nup188	Nucleoporin 188. (1628 aa)
	nup214	Nup214_FG domain-containing protein. (1990 aa)
	nup133	Nucleoporin 133. (1138 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup88	Nucleoporin 88. (721 aa)
	nup37	Nucleoporin 37. (326 aa)
	ENSXMAP00000021805	Uncharacterized protein. (210 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	nup43	Nucleoporin 43. (370 aa)
	LOC102218559	RAN binding protein 2. (2916 aa)
	nup160	Nucleoporin 160. (1416 aa)
	Nup205	Uncharacterized protein. (366 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000021805	LOC102218559	ENSXMAP00000021805	ENSXMAP00000034618	Uncharacterized protein.	RAN binding protein 2.	0.999
ENSXMAP00000021805	Nup205	ENSXMAP00000021805	ENSXMAP00000041768	Uncharacterized protein.	Uncharacterized protein.	0.988
ENSXMAP00000021805	ahctf1	ENSXMAP00000021805	ENSXMAP00000005550	Uncharacterized protein.	AT hook containing transcription factor 1.	0.985
ENSXMAP00000021805	nup133	ENSXMAP00000021805	ENSXMAP00000014178	Uncharacterized protein.	Nucleoporin 133.	0.999
ENSXMAP00000021805	nup155	ENSXMAP00000021805	ENSXMAP00000005128	Uncharacterized protein.	Nucleoporin 155.	0.987
ENSXMAP00000021805	nup160	ENSXMAP00000021805	ENSXMAP00000041035	Uncharacterized protein.	Nucleoporin 160.	0.999
ENSXMAP00000021805	nup188	ENSXMAP00000021805	ENSXMAP00000005688	Uncharacterized protein.	Nucleoporin 188.	0.971
ENSXMAP00000021805	nup214	ENSXMAP00000021805	ENSXMAP00000011381	Uncharacterized protein.	Nup214_FG domain-containing protein.	0.996
ENSXMAP00000021805	nup35	ENSXMAP00000021805	ENSXMAP00000000410	Uncharacterized protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.982
ENSXMAP00000021805	nup37	ENSXMAP00000021805	ENSXMAP00000021541	Uncharacterized protein.	Nucleoporin 37.	0.999
ENSXMAP00000021805	nup43	ENSXMAP00000021805	ENSXMAP00000027639	Uncharacterized protein.	Nucleoporin 43.	0.999
ENSXMAP00000021805	nup85	ENSXMAP00000021805	ENSXMAP00000014596	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
ENSXMAP00000021805	nup88	ENSXMAP00000021805	ENSXMAP00000020282	Uncharacterized protein.	Nucleoporin 88.	0.983
ENSXMAP00000021805	nup93	ENSXMAP00000021805	ENSXMAP00000022671	Uncharacterized protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.997
ENSXMAP00000021805	sec13	ENSXMAP00000021805	ENSXMAP00000019402	Uncharacterized protein.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.999
LOC102218559	ENSXMAP00000021805	ENSXMAP00000034618	ENSXMAP00000021805	RAN binding protein 2.	Uncharacterized protein.	0.999
LOC102218559	Nup205	ENSXMAP00000034618	ENSXMAP00000041768	RAN binding protein 2.	Uncharacterized protein.	0.996
LOC102218559	ahctf1	ENSXMAP00000034618	ENSXMAP00000005550	RAN binding protein 2.	AT hook containing transcription factor 1.	0.939
LOC102218559	nup133	ENSXMAP00000034618	ENSXMAP00000014178	RAN binding protein 2.	Nucleoporin 133.	0.999
LOC102218559	nup155	ENSXMAP00000034618	ENSXMAP00000005128	RAN binding protein 2.	Nucleoporin 155.	0.999