(19 nodes) Mixed, incl. GDP dissociation inhibitor, and Protein prenyltransferase activity network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102236184	Zgc:171927. (214 aa)
	LOC102231865	Uncharacterized protein. (203 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)
	rabggta	Rab geranylgeranyltransferase subunit alpha. (585 aa)
	LOC102237419	RAB15, member RAS oncogene family. (210 aa)
	rab3gap1	RAB3 GTPase activating protein subunit 1. (967 aa)
	LOC102218920	Uncharacterized protein. (202 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (456 aa)
	rab3gap2	RAB3 GTPase activating protein subunit 2 (non-catalytic). (1373 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (332 aa)
	LOC102232639	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (442 aa)
	LOC102230669	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	rab18	RAB18A, member RAS oncogene family. (204 aa)
	LOC102220727	RAB42, member RAS oncogene family a. (218 aa)
	LOC102225655	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	RAB37	RAB37, member RAS oncogene family. (241 aa)
	LOC102221052	CHM Rab escort protein. (697 aa)
	LOC102236931	ZRAB1B, member RAS oncogene family a. (201 aa)
	RAB41	RAB41, member RAS oncogene family. (211 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102218920	LOC102221052	ENSXMAP00000015808	ENSXMAP00000029837	Uncharacterized protein.	CHM Rab escort protein.	0.703
LOC102218920	LOC102225655	ENSXMAP00000015808	ENSXMAP00000027133	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.795
LOC102218920	LOC102230669	ENSXMAP00000015808	ENSXMAP00000023085	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.795
LOC102218920	LOC102231865	ENSXMAP00000015808	ENSXMAP00000005770	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC102218920	LOC102232639	ENSXMAP00000015808	ENSXMAP00000022139	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.795
LOC102218920	LOC102236184	ENSXMAP00000015808	ENSXMAP00000004695	Uncharacterized protein.	Zgc:171927.	0.901
LOC102218920	LOC102237419	ENSXMAP00000015808	ENSXMAP00000014388	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.544
LOC102218920	RAB41	ENSXMAP00000015808	ENSXMAP00000038379	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.545
LOC102218920	ptar1	ENSXMAP00000015808	ENSXMAP00000018220	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.517
LOC102218920	rab15	ENSXMAP00000015808	ENSXMAP00000007871	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.542
LOC102218920	rabggta	ENSXMAP00000015808	ENSXMAP00000012693	Uncharacterized protein.	Rab geranylgeranyltransferase subunit alpha.	0.711
LOC102218920	rabggtb	ENSXMAP00000015808	ENSXMAP00000022130	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.810
LOC102220727	LOC102221052	ENSXMAP00000024779	ENSXMAP00000029837	RAB42, member RAS oncogene family a.	CHM Rab escort protein.	0.713
LOC102220727	LOC102225655	ENSXMAP00000024779	ENSXMAP00000027133	RAB42, member RAS oncogene family a.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.576
LOC102220727	LOC102230669	ENSXMAP00000024779	ENSXMAP00000023085	RAB42, member RAS oncogene family a.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.576
LOC102220727	LOC102232639	ENSXMAP00000024779	ENSXMAP00000022139	RAB42, member RAS oncogene family a.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.576
LOC102220727	RAB41	ENSXMAP00000024779	ENSXMAP00000038379	RAB42, member RAS oncogene family a.	RAB41, member RAS oncogene family.	0.497
LOC102220727	ptar1	ENSXMAP00000024779	ENSXMAP00000018220	RAB42, member RAS oncogene family a.	Protein prenyltransferase alpha subunit repeat containing 1.	0.634
LOC102220727	rabggta	ENSXMAP00000024779	ENSXMAP00000012693	RAB42, member RAS oncogene family a.	Rab geranylgeranyltransferase subunit alpha.	0.634
LOC102220727	rabggtb	ENSXMAP00000024779	ENSXMAP00000022130	RAB42, member RAS oncogene family a.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.640