29 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102233077	Uncharacterized protein. (643 aa)
	LOC102219839	Uncharacterized protein. (1519 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (957 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (474 aa)
	zhx2	Zinc fingers and homeoboxes 2a. (900 aa)
	ankrd27	Ankyrin repeat domain 27 (VPS9 domain). (1035 aa)
	rab21	RAB21, member RAS oncogene family. (220 aa)
	LOC102230229	Uncharacterized protein. (617 aa)
	rbsn	Rabenosyn, RAB effector. (774 aa)
	vps45	Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (568 aa)
	LOC102217822	Uncharacterized protein. (451 aa)
	LOC102237454	RAB guanine nucleotide exchange factor (GEF) 1, like. (510 aa)
	rab24	RAB24, member RAS oncogene family. (203 aa)
	LOC102237801	Rabaptin, RAB GTPase binding effector protein 2. (472 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (860 aa)
	LOC102232359	Uncharacterized protein. (1042 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1485 aa)
	LOC102237634	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)
	LOC102221989	RAB5A, member RAS oncogene family, a. (216 aa)
	eea1	Early endosome antigen 1. (1400 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	LOC102231109	Uncharacterized protein. (223 aa)
	ENSXMAP00000033629	Uncharacterized protein. (73 aa)
	vamp7	Synaptobrevin-like 1; Belongs to the synaptobrevin family. (220 aa)
	LOC102233132	RAB5A, member RAS oncogene family, b. (216 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	LOC102217690	Zinc finger, AN1-type domain 3. (345 aa)
	LOC102224939	RAB5B, member RAS oncogene family. (216 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000033629	LOC102217822	ENSXMAP00000033629	ENSXMAP00000017578	Uncharacterized protein.	Uncharacterized protein.	0.502
ENSXMAP00000033629	LOC102221989	ENSXMAP00000033629	ENSXMAP00000028154	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.598
ENSXMAP00000033629	LOC102224939	ENSXMAP00000033629	ENSXMAP00000041232	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.598
ENSXMAP00000033629	LOC102231109	ENSXMAP00000033629	ENSXMAP00000033116	Uncharacterized protein.	Uncharacterized protein.	0.598
ENSXMAP00000033629	LOC102232359	ENSXMAP00000033629	ENSXMAP00000026420	Uncharacterized protein.	Uncharacterized protein.	0.598
ENSXMAP00000033629	LOC102233132	ENSXMAP00000033629	ENSXMAP00000037209	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.598
ENSXMAP00000033629	LOC102237454	ENSXMAP00000033629	ENSXMAP00000018513	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.502
ENSXMAP00000033629	LOC102237801	ENSXMAP00000033629	ENSXMAP00000025384	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.502
ENSXMAP00000033629	RAB31	ENSXMAP00000033629	ENSXMAP00000030703	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.598
ENSXMAP00000033629	rab22a	ENSXMAP00000033629	ENSXMAP00000037513	Uncharacterized protein.	RAB22A, member RAS oncogene family.	0.598
ENSXMAP00000033629	rab24	ENSXMAP00000033629	ENSXMAP00000018951	Uncharacterized protein.	RAB24, member RAS oncogene family.	0.598
ENSXMAP00000033629	rab5c	ENSXMAP00000033629	ENSXMAP00000026591	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.598
ENSXMAP00000033629	rabep1	ENSXMAP00000033629	ENSXMAP00000025979	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.502
ENSXMAP00000033629	rabgef1	ENSXMAP00000033629	ENSXMAP00000006656	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.502
ENSXMAP00000033629	rbsn	ENSXMAP00000033629	ENSXMAP00000015913	Uncharacterized protein.	Rabenosyn, RAB effector.	0.676
ENSXMAP00000033629	zhx2	ENSXMAP00000033629	ENSXMAP00000009028	Uncharacterized protein.	Zinc fingers and homeoboxes 2a.	0.598
LOC102217690	LOC102219839	ENSXMAP00000039947	ENSXMAP00000003600	Zinc finger, AN1-type domain 3.	Uncharacterized protein.	0.425
LOC102217690	LOC102221989	ENSXMAP00000039947	ENSXMAP00000028154	Zinc finger, AN1-type domain 3.	RAB5A, member RAS oncogene family, a.	0.434
LOC102217690	LOC102224939	ENSXMAP00000039947	ENSXMAP00000041232	Zinc finger, AN1-type domain 3.	RAB5B, member RAS oncogene family.	0.434
LOC102217690	LOC102230229	ENSXMAP00000039947	ENSXMAP00000014878	Zinc finger, AN1-type domain 3.	Uncharacterized protein.	0.409