12 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102233077	Uncharacterized protein. (643 aa)
	LOC102219839	Uncharacterized protein. (1519 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (474 aa)
	LOC102230229	Uncharacterized protein. (617 aa)
	LOC102217822	Uncharacterized protein. (451 aa)
	LOC102237454	RAB guanine nucleotide exchange factor (GEF) 1, like. (510 aa)
	LOC102237801	Rabaptin, RAB GTPase binding effector protein 2. (472 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (860 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	LOC102231109	Uncharacterized protein. (223 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	LOC102224939	RAB5B, member RAS oncogene family. (216 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102217822	LOC102219839	ENSXMAP00000017578	ENSXMAP00000003600	Uncharacterized protein.	Uncharacterized protein.	0.969
LOC102217822	LOC102224939	ENSXMAP00000017578	ENSXMAP00000041232	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.945
LOC102217822	LOC102230229	ENSXMAP00000017578	ENSXMAP00000014878	Uncharacterized protein.	Uncharacterized protein.	0.968
LOC102217822	LOC102231109	ENSXMAP00000017578	ENSXMAP00000033116	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC102217822	LOC102233077	ENSXMAP00000017578	ENSXMAP00000001473	Uncharacterized protein.	Uncharacterized protein.	0.968
LOC102217822	LOC102237454	ENSXMAP00000017578	ENSXMAP00000018513	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.590
LOC102217822	LOC102237801	ENSXMAP00000017578	ENSXMAP00000025384	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.999
LOC102217822	RAB31	ENSXMAP00000017578	ENSXMAP00000030703	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.945
LOC102217822	rab22a	ENSXMAP00000017578	ENSXMAP00000037513	Uncharacterized protein.	RAB22A, member RAS oncogene family.	0.945
LOC102217822	rabep1	ENSXMAP00000017578	ENSXMAP00000025979	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
LOC102217822	rabgef1	ENSXMAP00000017578	ENSXMAP00000006656	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.588
LOC102219839	LOC102217822	ENSXMAP00000003600	ENSXMAP00000017578	Uncharacterized protein.	Uncharacterized protein.	0.969
LOC102219839	LOC102224939	ENSXMAP00000003600	ENSXMAP00000041232	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.543
LOC102219839	LOC102231109	ENSXMAP00000003600	ENSXMAP00000033116	Uncharacterized protein.	Uncharacterized protein.	0.543
LOC102219839	LOC102237454	ENSXMAP00000003600	ENSXMAP00000018513	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.969
LOC102219839	RAB31	ENSXMAP00000003600	ENSXMAP00000030703	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.504
LOC102219839	rab22a	ENSXMAP00000003600	ENSXMAP00000037513	Uncharacterized protein.	RAB22A, member RAS oncogene family.	0.504
LOC102219839	rabgef1	ENSXMAP00000003600	ENSXMAP00000006656	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.969
LOC102224939	LOC102217822	ENSXMAP00000041232	ENSXMAP00000017578	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.945
LOC102224939	LOC102219839	ENSXMAP00000041232	ENSXMAP00000003600	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.543