(6 nodes) U4 snRNP network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snrpf	snrpd1	ENSXMAP00000015470	ENSXMAP00000003379	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
Snrpf	snrpd2	ENSXMAP00000015470	ENSXMAP00000001004	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpf	snrpd3	ENSXMAP00000015470	ENSXMAP00000001128	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpf	snrpe	ENSXMAP00000015470	ENSXMAP00000008868	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Snrpf	snrpg	ENSXMAP00000015470	ENSXMAP00000004358	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
snrpd1	Snrpf	ENSXMAP00000003379	ENSXMAP00000015470	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd1	snrpd2	ENSXMAP00000003379	ENSXMAP00000001004	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
snrpd1	snrpd3	ENSXMAP00000003379	ENSXMAP00000001128	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
snrpd1	snrpe	ENSXMAP00000003379	ENSXMAP00000008868	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd1	snrpg	ENSXMAP00000003379	ENSXMAP00000004358	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
snrpd2	Snrpf	ENSXMAP00000001004	ENSXMAP00000015470	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd2	snrpd1	ENSXMAP00000001004	ENSXMAP00000003379	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd2	snrpd3	ENSXMAP00000001004	ENSXMAP00000001128	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
snrpd2	snrpe	ENSXMAP00000001004	ENSXMAP00000008868	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd2	snrpg	ENSXMAP00000001004	ENSXMAP00000004358	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
snrpd3	Snrpf	ENSXMAP00000001128	ENSXMAP00000015470	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd3	snrpd1	ENSXMAP00000001128	ENSXMAP00000003379	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd3	snrpd2	ENSXMAP00000001128	ENSXMAP00000001004	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
snrpd3	snrpe	ENSXMAP00000001128	ENSXMAP00000008868	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd3	snrpg	ENSXMAP00000001128	ENSXMAP00000004358	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.999