(10 nodes) Prp19 complex, and Type III restriction enzyme, res subunit network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xab2	XPA binding protein 2. (847 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (747 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1468 aa)
	snw1	SNW domain containing 1. (536 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	ZNF830	Zinc finger protein 830. (335 aa)
	LOC102236196	ISY1 splicing factor homolog. (332 aa)
	bud31	BUD31 homolog. (241 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102236196	ZNF830	ENSXMAP00000024991	ENSXMAP00000020400	ISY1 splicing factor homolog.	Zinc finger protein 830.	0.932
LOC102236196	aqr	ENSXMAP00000024991	ENSXMAP00000009634	ISY1 splicing factor homolog.	Aquarius intron-binding spliceosomal factor.	0.990
LOC102236196	bud31	ENSXMAP00000024991	ENSXMAP00000037350	ISY1 splicing factor homolog.	BUD31 homolog.	0.999
LOC102236196	crnkl1	ENSXMAP00000024991	ENSXMAP00000006923	ISY1 splicing factor homolog.	Crooked neck pre-mRNA splicing factor 1.	0.999
LOC102236196	ppie	ENSXMAP00000024991	ENSXMAP00000019084	ISY1 splicing factor homolog.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.983
LOC102236196	prpf19	ENSXMAP00000024991	ENSXMAP00000008514	ISY1 splicing factor homolog.	Pre-mRNA processing factor 19.	0.998
LOC102236196	rbm22	ENSXMAP00000024991	ENSXMAP00000008710	ISY1 splicing factor homolog.	RNA binding motif protein 22.	0.992
LOC102236196	snw1	ENSXMAP00000024991	ENSXMAP00000010965	ISY1 splicing factor homolog.	SNW domain containing 1.	0.993
LOC102236196	xab2	ENSXMAP00000024991	ENSXMAP00000004234	ISY1 splicing factor homolog.	XPA binding protein 2.	0.999
ZNF830	LOC102236196	ENSXMAP00000020400	ENSXMAP00000024991	Zinc finger protein 830.	ISY1 splicing factor homolog.	0.932
ZNF830	aqr	ENSXMAP00000020400	ENSXMAP00000009634	Zinc finger protein 830.	Aquarius intron-binding spliceosomal factor.	0.976
ZNF830	bud31	ENSXMAP00000020400	ENSXMAP00000037350	Zinc finger protein 830.	BUD31 homolog.	0.918
ZNF830	crnkl1	ENSXMAP00000020400	ENSXMAP00000006923	Zinc finger protein 830.	Crooked neck pre-mRNA splicing factor 1.	0.969
ZNF830	ppie	ENSXMAP00000020400	ENSXMAP00000019084	Zinc finger protein 830.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.980
ZNF830	prpf19	ENSXMAP00000020400	ENSXMAP00000008514	Zinc finger protein 830.	Pre-mRNA processing factor 19.	0.970
ZNF830	rbm22	ENSXMAP00000020400	ENSXMAP00000008710	Zinc finger protein 830.	RNA binding motif protein 22.	0.781
ZNF830	snw1	ENSXMAP00000020400	ENSXMAP00000010965	Zinc finger protein 830.	SNW domain containing 1.	0.970
ZNF830	xab2	ENSXMAP00000020400	ENSXMAP00000004234	Zinc finger protein 830.	XPA binding protein 2.	0.963
aqr	LOC102236196	ENSXMAP00000009634	ENSXMAP00000024991	Aquarius intron-binding spliceosomal factor.	ISY1 splicing factor homolog.	0.990
aqr	ZNF830	ENSXMAP00000009634	ENSXMAP00000020400	Aquarius intron-binding spliceosomal factor.	Zinc finger protein 830.	0.976