STRINGSTRING
LOC102220948 LOC102220948 LOC102225517 LOC102225517 edc3 edc3 dcp2 dcp2 lsm3 lsm3 lsm6 lsm6 LOC102233839 LOC102233839 dcp1b dcp1b patl1 patl1 EIF4ENIF1 EIF4ENIF1 lsm14a lsm14a nudt3 nudt3 sart3 sart3 xrn1 xrn1 patl2 patl2 c18h19orf54 c18h19orf54 lsm7 lsm7 edc4 edc4 nudt8 nudt8 dcp1a dcp1a lsm8 lsm8 nudt7 nudt7 LOC102237787 LOC102237787 lsm1 lsm1 nudt19 nudt19 lsm2 lsm2 lsm4 lsm4 yjefn3 yjefn3 lsm5 lsm5 ddx6 ddx6 LOC102220665 LOC102220665
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102220948Nudix (nucleoside diphosphate linked moiety X)-type motif 4a. (183 aa)
LOC102225517Nudix (nucleoside diphosphate linked moiety X)-type motif 4b. (186 aa)
edc3Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
dcp2Decapping mRNA 2. (398 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
LOC102233839LSM family member 14B. (368 aa)
dcp1bDecapping mRNA 1B. (630 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (799 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (948 aa)
lsm14aLSM14A mRNA processing body assembly factor b. (441 aa)
nudt3Nudix (nucleoside diphosphate linked moiety X)-type motif 3b. (178 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (942 aa)
xrn15'-3' exoribonuclease 1. (1559 aa)
patl2PAT1 homolog 2. (707 aa)
c18h19orf54Zgc:153119. (303 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (109 aa)
edc4Enhancer of mRNA decapping 4. (1386 aa)
nudt8Nudix hydrolase domain-containing protein. (398 aa)
dcp1aDecapping mRNA 1A. (491 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
nudt7Nudix (nucleoside diphosphate linked moiety X)-type motif 7. (231 aa)
LOC102237787Uncharacterized protein; Belongs to the DEAD box helicase family. (483 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
nudt19Nudix (nucleoside diphosphate linked moiety X)-type motif 19. (393 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (93 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (188 aa)
yjefn3YjeF N-terminal domain containing 3. (249 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (482 aa)
LOC102220665LSM14A mRNA processing body assembly factor a. (459 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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