(6 nodes) Mixed, incl. Sodium/calcium exchanger protein, and Galactoside binding network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M3ZW95_XIPMA	Si:ch211-214c7.5. (214 aa)
	LOC102233577	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (952 aa)
	ppp1r14b	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb. (128 aa)
	LOC102233183	Galectin. (350 aa)
	LOC102238122	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (946 aa)
	LOC102237966	Uncharacterized protein. (189 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102233183	LOC102233577	ENSXMAP00000034270	ENSXMAP00000022347	Galectin.	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.649
LOC102233183	LOC102237966	ENSXMAP00000034270	ENSXMAP00000040259	Galectin.	Uncharacterized protein.	0.651
LOC102233183	LOC102238122	ENSXMAP00000034270	ENSXMAP00000039661	Galectin.	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.649
LOC102233183	M3ZW95_XIPMA	ENSXMAP00000034270	ENSXMAP00000006489	Galectin.	Si:ch211-214c7.5.	0.647
LOC102233577	LOC102233183	ENSXMAP00000022347	ENSXMAP00000034270	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Galectin.	0.649
LOC102233577	LOC102237966	ENSXMAP00000022347	ENSXMAP00000040259	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Uncharacterized protein.	0.645
LOC102233577	M3ZW95_XIPMA	ENSXMAP00000022347	ENSXMAP00000006489	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Si:ch211-214c7.5.	0.644
LOC102233577	ppp1r14b	ENSXMAP00000022347	ENSXMAP00000029636	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.	0.539
LOC102237966	LOC102233183	ENSXMAP00000040259	ENSXMAP00000034270	Uncharacterized protein.	Galectin.	0.651
LOC102237966	LOC102233577	ENSXMAP00000040259	ENSXMAP00000022347	Uncharacterized protein.	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.645
LOC102237966	LOC102238122	ENSXMAP00000040259	ENSXMAP00000039661	Uncharacterized protein.	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.645
LOC102237966	M3ZW95_XIPMA	ENSXMAP00000040259	ENSXMAP00000006489	Uncharacterized protein.	Si:ch211-214c7.5.	0.647
LOC102238122	LOC102233183	ENSXMAP00000039661	ENSXMAP00000034270	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Galectin.	0.649
LOC102238122	LOC102237966	ENSXMAP00000039661	ENSXMAP00000040259	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Uncharacterized protein.	0.645
LOC102238122	M3ZW95_XIPMA	ENSXMAP00000039661	ENSXMAP00000006489	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Si:ch211-214c7.5.	0.644
LOC102238122	ppp1r14b	ENSXMAP00000039661	ENSXMAP00000029636	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.	0.526
M3ZW95_XIPMA	LOC102233183	ENSXMAP00000006489	ENSXMAP00000034270	Si:ch211-214c7.5.	Galectin.	0.647
M3ZW95_XIPMA	LOC102233577	ENSXMAP00000006489	ENSXMAP00000022347	Si:ch211-214c7.5.	Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.644
M3ZW95_XIPMA	LOC102237966	ENSXMAP00000006489	ENSXMAP00000040259	Si:ch211-214c7.5.	Uncharacterized protein.	0.647
M3ZW95_XIPMA	LOC102238122	ENSXMAP00000006489	ENSXMAP00000039661	Si:ch211-214c7.5.	Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.644