(10 nodes) SMN complex network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102225003	WD repeat, sterile alpha motif and U-box domain containing 1. (475 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (766 aa)
	gemin2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (258 aa)
	gemin6	Gem (nuclear organelle) associated protein 6. (191 aa)
	gemin7	Gem (nuclear organelle) associated protein 7. (128 aa)
	gemin5	Gem (nuclear organelle) associated protein 5. (1445 aa)
	gemin8	Gem (nuclear organelle) associated protein 8. (194 aa)
	strap	Serine/threonine kinase receptor associated protein. (329 aa)
	LOC102216861	Survival of motor neuron 1, telomeric. (283 aa)
	gemin4	Gem (nuclear organelle) associated protein 4. (1121 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102216861	LOC102225003	ENSXMAP00000037183	ENSXMAP00000001722	Survival of motor neuron 1, telomeric.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.557
LOC102216861	ddx20	ENSXMAP00000037183	ENSXMAP00000007598	Survival of motor neuron 1, telomeric.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.997
LOC102216861	gemin2	ENSXMAP00000037183	ENSXMAP00000009560	Survival of motor neuron 1, telomeric.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.979
LOC102216861	gemin4	ENSXMAP00000037183	ENSXMAP00000040514	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 4.	0.908
LOC102216861	gemin5	ENSXMAP00000037183	ENSXMAP00000023967	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 5.	0.938
LOC102216861	gemin6	ENSXMAP00000037183	ENSXMAP00000014210	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 6.	0.702
LOC102216861	gemin7	ENSXMAP00000037183	ENSXMAP00000019603	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 7.	0.883
LOC102216861	gemin8	ENSXMAP00000037183	ENSXMAP00000027460	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 8.	0.906
LOC102216861	strap	ENSXMAP00000037183	ENSXMAP00000032024	Survival of motor neuron 1, telomeric.	Serine/threonine kinase receptor associated protein.	0.803
LOC102225003	LOC102216861	ENSXMAP00000001722	ENSXMAP00000037183	WD repeat, sterile alpha motif and U-box domain containing 1.	Survival of motor neuron 1, telomeric.	0.557
LOC102225003	ddx20	ENSXMAP00000001722	ENSXMAP00000007598	WD repeat, sterile alpha motif and U-box domain containing 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.665
LOC102225003	gemin4	ENSXMAP00000001722	ENSXMAP00000040514	WD repeat, sterile alpha motif and U-box domain containing 1.	Gem (nuclear organelle) associated protein 4.	0.595
LOC102225003	gemin6	ENSXMAP00000001722	ENSXMAP00000014210	WD repeat, sterile alpha motif and U-box domain containing 1.	Gem (nuclear organelle) associated protein 6.	0.477
LOC102225003	gemin7	ENSXMAP00000001722	ENSXMAP00000019603	WD repeat, sterile alpha motif and U-box domain containing 1.	Gem (nuclear organelle) associated protein 7.	0.562
LOC102225003	gemin8	ENSXMAP00000001722	ENSXMAP00000027460	WD repeat, sterile alpha motif and U-box domain containing 1.	Gem (nuclear organelle) associated protein 8.	0.612
LOC102225003	strap	ENSXMAP00000001722	ENSXMAP00000032024	WD repeat, sterile alpha motif and U-box domain containing 1.	Serine/threonine kinase receptor associated protein.	0.490
ddx20	LOC102216861	ENSXMAP00000007598	ENSXMAP00000037183	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Survival of motor neuron 1, telomeric.	0.997
ddx20	LOC102225003	ENSXMAP00000007598	ENSXMAP00000001722	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.665
ddx20	gemin2	ENSXMAP00000007598	ENSXMAP00000009560	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.867
ddx20	gemin4	ENSXMAP00000007598	ENSXMAP00000040514	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 4.	0.997