(30 nodes) Mixed, incl. T cell costimulation, and Apolipoprotein L network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102218815	Zona pellucida glycoprotein 3f, tandem duplicate 2. (341 aa)
	LOC102221123	Uncharacterized protein. (460 aa)
	M3ZVJ2_XIPMA	Uncharacterized protein. (618 aa)
	LOC102224714	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (443 aa)
	LOC102218387	Uncharacterized protein. (1116 aa)
	LOC106700269	Uncharacterized protein. (254 aa)
	LOC102229516	Uncharacterized protein. (571 aa)
	ENSXMAP00000021746	Uncharacterized protein. (341 aa)
	LOC106700066	Uncharacterized protein. (474 aa)
	ENSXMAP00000023496	Uncharacterized protein. (220 aa)
	ENSXMAP00000023543	Uncharacterized protein. (359 aa)
	ENSXMAP00000023637	Uncharacterized protein. (472 aa)
	LOC102225406	Uncharacterized protein. (469 aa)
	LOC102220372	Si:ch211-197h24.6. (447 aa)
	LOC102230545	Si:ch211-260e23.9. (167 aa)
	LOC102218993	Si:ch73-233k15.2. (574 aa)
	LOC102224453	DUF4592 domain-containing protein. (1199 aa)
	LOC102217637	Si:dkey-165a24.9; Belongs to the G-protein coupled receptor 1 family. (338 aa)
	LOC111611674	Uncharacterized protein. (747 aa)
	LOC102221021	Uncharacterized LOC102221021. (146 aa)
	LOC111608979	Uncharacterized protein. (310 aa)
	ENSXMAP00000028201	Uncharacterized protein. (359 aa)
	LOC102224626	Uncharacterized protein. (472 aa)
	ENSXMAP00000030805	Uncharacterized protein. (382 aa)
	LOC102221454	Actinodin2. (507 aa)
	ENSXMAP00000034434	Uncharacterized protein. (212 aa)
	LOC111608939	Uncharacterized protein. (331 aa)
	LOC111608939-2	Uncharacterized protein. (315 aa)
	ENSXMAP00000036994	Uncharacterized protein. (974 aa)
	ENSXMAP00000038270	Uncharacterized protein. (367 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000023496	LOC102224714	ENSXMAP00000023496	ENSXMAP00000007302	Uncharacterized protein.	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.440
LOC102221454	LOC102229516	ENSXMAP00000034244	ENSXMAP00000020813	Actinodin2.	Uncharacterized protein.	0.483
LOC102224714	ENSXMAP00000023496	ENSXMAP00000007302	ENSXMAP00000023496	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.440
LOC102224714	LOC106700269	ENSXMAP00000007302	ENSXMAP00000020690	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.438
LOC102229516	LOC102221454	ENSXMAP00000020813	ENSXMAP00000034244	Uncharacterized protein.	Actinodin2.	0.483
LOC106700269	LOC102224714	ENSXMAP00000020690	ENSXMAP00000007302	Uncharacterized protein.	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.438