(10 nodes) Organellar small ribosomal subunit network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrps10	Mitochondrial ribosomal protein S10. (204 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (194 aa)
	dap3	Death associated protein 3. (395 aa)
	mrps12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	mrps14	Mitochondrial ribosomal protein S14. (138 aa)
	mrps5	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (405 aa)
	mrps35	Mitochondrial ribosomal protein S35. (334 aa)
	mrps25	Mitochondrial ribosomal protein S25. (172 aa)
	mrps15	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (260 aa)
	mrps7	Mitochondrial ribosomal protein S7. (240 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dap3	mrps10	ENSXMAP00000016207	ENSXMAP00000003242	Death associated protein 3.	Mitochondrial ribosomal protein S10.	0.999
dap3	mrps11	ENSXMAP00000016207	ENSXMAP00000011629	Death associated protein 3.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.998
dap3	mrps12	ENSXMAP00000016207	ENSXMAP00000021977	Death associated protein 3.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.997
dap3	mrps14	ENSXMAP00000016207	ENSXMAP00000029819	Death associated protein 3.	Mitochondrial ribosomal protein S14.	0.998
dap3	mrps15	ENSXMAP00000016207	ENSXMAP00000036323	Death associated protein 3.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.998
dap3	mrps25	ENSXMAP00000016207	ENSXMAP00000035367	Death associated protein 3.	Mitochondrial ribosomal protein S25.	0.993
dap3	mrps35	ENSXMAP00000016207	ENSXMAP00000034870	Death associated protein 3.	Mitochondrial ribosomal protein S35.	0.998
dap3	mrps5	ENSXMAP00000016207	ENSXMAP00000033262	Death associated protein 3.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
dap3	mrps7	ENSXMAP00000016207	ENSXMAP00000040237	Death associated protein 3.	Mitochondrial ribosomal protein S7.	0.999
mrps10	dap3	ENSXMAP00000003242	ENSXMAP00000016207	Mitochondrial ribosomal protein S10.	Death associated protein 3.	0.999
mrps10	mrps11	ENSXMAP00000003242	ENSXMAP00000011629	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
mrps10	mrps12	ENSXMAP00000003242	ENSXMAP00000021977	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
mrps10	mrps14	ENSXMAP00000003242	ENSXMAP00000029819	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S14.	0.999
mrps10	mrps15	ENSXMAP00000003242	ENSXMAP00000036323	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
mrps10	mrps25	ENSXMAP00000003242	ENSXMAP00000035367	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S25.	0.994
mrps10	mrps35	ENSXMAP00000003242	ENSXMAP00000034870	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S35.	0.999
mrps10	mrps5	ENSXMAP00000003242	ENSXMAP00000033262	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
mrps10	mrps7	ENSXMAP00000003242	ENSXMAP00000040237	Mitochondrial ribosomal protein S10.	Mitochondrial ribosomal protein S7.	0.997
mrps11	dap3	ENSXMAP00000011629	ENSXMAP00000016207	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	Death associated protein 3.	0.998
mrps11	mrps10	ENSXMAP00000011629	ENSXMAP00000003242	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	Mitochondrial ribosomal protein S10.	0.999