STRINGSTRING
mcm2 mcm2 cdca7l cdca7l rad51 rad51 LOC102224037 LOC102224037 MCMDC2 MCMDC2 rfc5 rfc5 gins2 gins2 timeless timeless rad51c rad51c pole4 pole4 exd2 exd2 top3a top3a mre11 mre11 cdc7 cdc7 M3ZPS4_XIPMA M3ZPS4_XIPMA LOC102220076 LOC102220076 top3b top3b mcm5 mcm5 orc5 orc5 rtel1 rtel1 cdca7 cdca7 brip1 brip1 hells hells lig1 lig1 pms1 pms1 pold3 pold3 ten1 ten1 fen1 fen1 chtf8 chtf8 atrip atrip rbbp8 rbbp8 dbf4 dbf4 brca2 brca2 nbn nbn polk polk xrcc3 xrcc3 chtf18 chtf18 pole pole orc3 orc3 ercc4 ercc4 sass6 sass6 pole2 pole2 mcm10 mcm10 rad23a rad23a M4A3H1_XIPMA M4A3H1_XIPMA atr atr prim2 prim2 rmi2 rmi2 LOC102228171 LOC102228171 rfc1 rfc1 pola2 pola2 wdhd1 wdhd1 rad9a rad9a brca1 brca1 mcph1 mcph1 RPA1 RPA1 stn1 stn1 exo1 exo1 polh polh orc4 orc4 dscc1 dscc1 rev1 rev1 rad51d rad51d pold1 pold1 meiob meiob dmc1 dmc1 hus1 hus1 msh5 msh5 rad54b rad54b pold4 pold4 RAD23B RAD23B cdc6 cdc6 LOC102218031 LOC102218031 msh2 msh2 rpa2 rpa2 cdc45 cdc45 pcna pcna pms2 pms2 rmi1 rmi1 recql4 recql4 pold2 pold2 ercc1 ercc1 gins3 gins3 mcm7 mcm7 bivm bivm CLSPN CLSPN atm atm wdr76 wdr76 prim1 prim1 spo11 spo11 tp53bp1 tp53bp1 mcm6 mcm6 MPHOSPH9 MPHOSPH9 ercc5 ercc5 xpc xpc mad2l2 mad2l2 M4AYA4_XIPMA M4AYA4_XIPMA gins1 gins1 tdrd3 tdrd3 ctc1 ctc1 topbp1 topbp1 xpa xpa pola1 pola1 gins4 gins4 poli poli ENSXMAP00000024871 ENSXMAP00000024871 ENSXMAP00000025311 ENSXMAP00000025311 rev3l rev3l ENSXMAP00000025712 ENSXMAP00000025712 blm blm mlh1 mlh1 ankrd11 ankrd11 rfc2 rfc2 rfc4 rfc4 rhno1 rhno1 psmc3ip psmc3ip rad17 rad17 rad1 rad1 xrcc2 xrcc2 rpa3 rpa3 msh4 msh4 mlh3 mlh3 Mcmbp Mcmbp palb2 palb2 mcm8 mcm8 ENSXMAP00000034387 ENSXMAP00000034387 dna2 dna2 Mcm9 Mcm9 ENSXMAP00000034984 ENSXMAP00000034984 LOC102230232 LOC102230232 tipin tipin orc2 orc2 rpa1 rpa1 mcm3 mcm3 rad52 rad52 pole3 pole3 cdt1 cdt1 orc1 orc1 MSH3 MSH3 mnd1 mnd1 rad50 rad50 bard1 bard1 mcm4 mcm4 rfc3 rfc3 LOC111609834 LOC111609834 msh6 msh6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mcm2DNA helicase; Belongs to the MCM family. (886 aa)
cdca7lCell division cycle associated 7b. (398 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (338 aa)
LOC102224037Checkpoint kinase 2. (442 aa)
MCMDC2Minichromosome maintenance domain containing 2. (649 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
timelessTimeless circadian clock. (1260 aa)
rad51cRAD51 paralog C. (352 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
exd2Exonuclease 3'-5' domain containing 2. (639 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1023 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
cdc7Cell division cycle 7 homolog (S. cerevisiae). (606 aa)
M3ZPS4_XIPMAUncharacterized protein. (185 aa)
LOC102220076Zgc:110269. (347 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (858 aa)
mcm5DNA helicase; Belongs to the MCM family. (695 aa)
orc5Origin recognition complex, subunit 5. (442 aa)
rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1165 aa)
cdca7Cell division cycle associated 7a. (402 aa)
brip1BRCA1 interacting protein C-terminal helicase 1. (1188 aa)
hellsHelicase, lymphoid specific. (854 aa)
lig1DNA ligase. (595 aa)
pms1PMS1 homolog 1, mismatch repair system component. (860 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (438 aa)
ten1TEN1 subunit of CST complex. (132 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (133 aa)
atripUncharacterized protein. (766 aa)
rbbp8Uncharacterized protein. (638 aa)
dbf4DBF4 zinc finger. (593 aa)
brca2BRCA2 DNA repair associated. (3052 aa)
nbnNibrin. (831 aa)
polkPolymerase (DNA directed) kappa. (935 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (364 aa)
chtf18AAA domain-containing protein. (922 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2281 aa)
orc3Origin recognition complex, subunit 3. (722 aa)
ercc4Excision repair cross-complementation group 4. (893 aa)
sass6SAS-6 centriolar assembly protein. (582 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (870 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (369 aa)
M4A3H1_XIPMAHORMA domain containing 1. (241 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2443 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (501 aa)
rmi2RecQ mediated genome instability 2. (143 aa)
LOC102228171Centrin, EF-hand protein, 2. (174 aa)
rfc1Replication factor C subunit 1. (1195 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (603 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1102 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (389 aa)
brca1Uncharacterized protein. (1370 aa)
mcph1Microcephalin 1. (817 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (700 aa)
stn1CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (359 aa)
exo1Exonuclease 1. (777 aa)
polhPolymerase (DNA directed), eta. (720 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (434 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
rev1REV1 DNA directed polymerase. (1363 aa)
rad51dRAD51 paralog D. (339 aa)
pold1DNA polymerase. (1105 aa)
meiobMethionine sulfoxide reductase B1b. (425 aa)
dmc1DNA meiotic recombinase 1; Belongs to the RecA family. (274 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (271 aa)
msh5MutS homolog 5. (787 aa)
rad54bRAD54 homolog B. (858 aa)
pold4Si:dkey-28b4.7. (108 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (394 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (579 aa)
LOC102218031ATPase family AAA domain containing 5a. (1810 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (937 aa)
rpa2Replication protein A2. (278 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (570 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
pms2PMS1 homolog 2, mismatch repair system component. (826 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (680 aa)
recql4RecQ helicase-like 4. (1385 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (528 aa)
ercc1Excision repair cross-complementation group 1. (350 aa)
gins3GINS complex subunit 3. (211 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (724 aa)
bivmBasic, immunoglobulin-like variable motif containing. (502 aa)
CLSPNClaspin. (1202 aa)
atmATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2875 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (546 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
spo11SPO11 initiator of meiotic double stranded breaks. (387 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1252 aa)
mcm6DNA helicase; Belongs to the MCM family. (816 aa)
MPHOSPH9M-phase phosphoprotein 9. (1251 aa)
ercc5Excision repair cross-complementation group 5. (1097 aa)
xpcXeroderma pigmentosum, complementation group C. (934 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
M4AYA4_XIPMAANK_REP_REGION domain-containing protein. (378 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (189 aa)
tdrd3Tudor domain containing 3. (796 aa)
ctc1Uncharacterized protein. (794 aa)
topbp1DNA topoisomerase II binding protein 1. (1509 aa)
xpaXeroderma pigmentosum, complementation group A. (276 aa)
pola1DNA polymerase. (1488 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (224 aa)
poliPolymerase (DNA directed) iota. (708 aa)
ENSXMAP00000024871MCM domain-containing protein; Belongs to the MCM family. (351 aa)
ENSXMAP00000025311DNA_MISMATCH_REPAIR_2 domain-containing protein. (351 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (3006 aa)
ENSXMAP00000025712BRCT domain-containing protein. (149 aa)
blmBLM RecQ like helicase. (1398 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (754 aa)
ankrd11Ankyrin repeat domain 11. (2826 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
rhno1Si:ch73-352p4.5. (297 aa)
psmc3ipPSMC3 interacting protein. (220 aa)
rad17RAD17 checkpoint clamp loader component. (616 aa)
rad1RAD1 homolog (S. pombe). (289 aa)
xrcc2X-ray repair cross complementing 2. (311 aa)
rpa3Replication protein A3. (122 aa)
msh4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (912 aa)
mlh3MutL homolog 3 (E. coli). (1151 aa)
McmbpUncharacterized protein. (112 aa)
palb2PALB2_WD40 domain-containing protein. (1346 aa)
mcm8Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (846 aa)
ENSXMAP00000034387DNA_MISMATCH_REPAIR_2 domain-containing protein. (228 aa)
dna2Uncharacterized protein. (1324 aa)
Mcm9Uncharacterized protein. (158 aa)
ENSXMAP00000034984MutS_I domain-containing protein. (206 aa)
LOC102230232RPA_C domain-containing protein. (247 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (290 aa)
orc2Origin recognition complex, subunit 2. (594 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
mcm3DNA helicase; Belongs to the MCM family. (836 aa)
rad52RAD52 homolog, DNA repair protein. (445 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (150 aa)
cdt1Chromatin licensing and DNA replication factor 1. (761 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (890 aa)
MSH3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1112 aa)
mnd1Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (199 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
bard1BRCA1 associated RING domain 1. (800 aa)
mcm4DNA helicase; Belongs to the MCM family. (868 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC111609834DBF4-type domain-containing protein. (692 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1376 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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