STRINGSTRING
casc3 casc3 smg9 smg9 LOC102233713 LOC102233713 dcp1a dcp1a pnrc2 pnrc2 NCBP1 NCBP1 UPF2 UPF2 skiv2l skiv2l eif4a3 eif4a3 upf3b upf3b smg5 smg5 rbm8a rbm8a LOC102218128 LOC102218128 M4AFX0_XIPMA M4AFX0_XIPMA pym1 pym1 dcp1b dcp1b smg6 smg6 smg1 smg1 ncbp2 ncbp2 helz2 helz2 smg8 smg8 dcp2 dcp2 smg7 smg7 etf1 etf1 nbas nbas ctif ctif UPF1 UPF1 LOC102235710 LOC102235710
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
casc3Casc3 exon junction complex subunit. (767 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (507 aa)
LOC102233713Mago homolog, exon junction complex subunit. (149 aa)
dcp1aDecapping mRNA 1A. (491 aa)
pnrc2Proline-rich nuclear receptor coactivator 2. (155 aa)
NCBP1Nuclear cap binding protein subunit 1. (796 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1307 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1245 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (453 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1113 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC102218128UPF3A regulator of nonsense mediated mRNA decay. (464 aa)
M4AFX0_XIPMAMechanistic target of rapamycin kinase; Belongs to the PI3/PI4-kinase family. (777 aa)
pym1PYM homolog 1, exon junction complex associated factor. (213 aa)
dcp1bDecapping mRNA 1B. (630 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1618 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3624 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
helz2RNB domain-containing protein. (2696 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (917 aa)
dcp2Decapping mRNA 2. (398 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1135 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
nbasNeuroblastoma amplified sequence. (2371 aa)
ctifCBP80/20-dependent translation initiation factor. (702 aa)
UPF1UPF1 RNA helicase and ATPase. (1098 aa)
LOC102235710Uncharacterized protein. (1084 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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