48 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102220267	Procollagen C-endopeptidase enhancer a. (464 aa)
	itga11	Integrin, alpha 11a; Belongs to the integrin alpha chain family. (1203 aa)
	LOC102231337	C1q and TNF related 6a. (245 aa)
	LOC102232368	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (522 aa)
	LOC102233410	Uncharacterized protein. (490 aa)
	pcolce2	Procollagen C-endopeptidase enhancer 2b. (391 aa)
	MUSK	Muscle associated receptor tyrosine kinase. (861 aa)
	itga1	Integrin, alpha 1; Belongs to the integrin alpha chain family. (1178 aa)
	LOC102228719	Mothers against decapentaplegic homolog. (503 aa)
	LOC102219334	SPARC-like 1. (642 aa)
	LOC102231467	VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1090 aa)
	itga2	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family. (1183 aa)
	ECM2	Extracellular matrix protein 2. (741 aa)
	ddr1	Discoidin domain receptor tyrosine kinase 1. (1000 aa)
	LOC102219327	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2773 aa)
	ddr2	Discoidin domain receptor tyrosine kinase 2a. (864 aa)
	col6a2	Collagen, type VI, alpha 2. (970 aa)
	LOC102223337	Discoidin domain receptor tyrosine kinase 2b. (859 aa)
	LOC102227077	Uncharacterized protein. (1047 aa)
	itga10	Integrin, alpha 10; Belongs to the integrin alpha chain family. (1118 aa)
	ush2a	Usher syndrome 2A (autosomal recessive, mild). (5058 aa)
	LOC102218732	Lumican. (342 aa)
	sparc	Secreted protein, acidic, cysteine-rich (osteonectin). (298 aa)
	LOC102234095	Leucine rich repeat containing 15. (463 aa)
	LOC102225323	Mothers against decapentaplegic homolog. (563 aa)
	LOC102233791	Platelet-derived growth factor alpha polypeptide a; Belongs to the PDGF/VEGF growth factor family. (199 aa)
	LOC111608360	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (641 aa)
	ENSXMAP00000024660	Uncharacterized protein. (295 aa)
	LOC111606533	SPARC-like 2. (213 aa)
	ENSXMAP00000025583	LRRCT domain-containing protein. (403 aa)
	LOC102217956	Uncharacterized protein. (740 aa)
	LOC102225088	Adhesion G protein-coupled receptor G4a; Belongs to the G-protein coupled receptor 2 family. (1223 aa)
	LOC102232617	LRRCT domain-containing protein. (536 aa)
	LOC102222941	Si:ch211-117l17.7. (690 aa)
	SMAD4	Mothers against decapentaplegic homolog. (512 aa)
	LOC102236203	Chondroadherin-like b. (775 aa)
	LOC102217618	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family. (450 aa)
	LOC102219343	Discoidin domain receptor family, member 2, like. (909 aa)
	podn	Podocan. (587 aa)
	dcn	Decorin; May affect the rate of fibrils formation. (360 aa)
	M3ZDK8_XIPMA	Adhesion G protein-coupled receptor G4b; Belongs to the G-protein coupled receptor 2 family. (407 aa)
	ENSXMAP00000038259	Uncharacterized protein. (231 aa)
	Adgrg2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (4821 aa)
	pdgfa	Platelet-derived growth factor alpha polypeptide b; Belongs to the PDGF/VEGF growth factor family. (228 aa)
	LOC102229118	LRRNT domain-containing protein. (668 aa)
	adgrg6	Adhesion G protein-coupled receptor G6; Belongs to the G-protein coupled receptor 2 family. (1358 aa)
	LOC102235349	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (570 aa)
	serpinh1	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family. (405 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000025583	LOC102218732	ENSXMAP00000025583	ENSXMAP00000018641	LRRCT domain-containing protein.	Lumican.	0.412
ENSXMAP00000038259	LOC102231467	ENSXMAP00000038259	ENSXMAP00000007783	Uncharacterized protein.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.475
ENSXMAP00000038259	LOC102233410	ENSXMAP00000038259	ENSXMAP00000001537	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSXMAP00000038259	itga1	ENSXMAP00000038259	ENSXMAP00000004924	Uncharacterized protein.	Integrin, alpha 1; Belongs to the integrin alpha chain family.	0.475
ENSXMAP00000038259	itga10	ENSXMAP00000038259	ENSXMAP00000016321	Uncharacterized protein.	Integrin, alpha 10; Belongs to the integrin alpha chain family.	0.475
ENSXMAP00000038259	itga11	ENSXMAP00000038259	ENSXMAP00000000487	Uncharacterized protein.	Integrin, alpha 11a; Belongs to the integrin alpha chain family.	0.475
ENSXMAP00000038259	itga2	ENSXMAP00000038259	ENSXMAP00000010202	Uncharacterized protein.	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.	0.475
LOC102217618	LOC102227077	ENSXMAP00000032464	ENSXMAP00000015651	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Uncharacterized protein.	0.452
LOC102217618	col6a2	ENSXMAP00000032464	ENSXMAP00000011767	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Collagen, type VI, alpha 2.	0.452
LOC102218732	ENSXMAP00000025583	ENSXMAP00000018641	ENSXMAP00000025583	Lumican.	LRRCT domain-containing protein.	0.412
LOC102218732	LOC102231467	ENSXMAP00000018641	ENSXMAP00000007783	Lumican.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.428
LOC102218732	LOC111606533	ENSXMAP00000018641	ENSXMAP00000025132	Lumican.	SPARC-like 2.	0.870
LOC102218732	dcn	ENSXMAP00000018641	ENSXMAP00000037328	Lumican.	Decorin; May affect the rate of fibrils formation.	0.939
LOC102218732	itga1	ENSXMAP00000018641	ENSXMAP00000004924	Lumican.	Integrin, alpha 1; Belongs to the integrin alpha chain family.	0.428
LOC102218732	itga10	ENSXMAP00000018641	ENSXMAP00000016321	Lumican.	Integrin, alpha 10; Belongs to the integrin alpha chain family.	0.428
LOC102218732	itga11	ENSXMAP00000018641	ENSXMAP00000000487	Lumican.	Integrin, alpha 11a; Belongs to the integrin alpha chain family.	0.428
LOC102218732	itga2	ENSXMAP00000018641	ENSXMAP00000010202	Lumican.	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.	0.428
LOC102218732	sparc	ENSXMAP00000018641	ENSXMAP00000019297	Lumican.	Secreted protein, acidic, cysteine-rich (osteonectin).	0.870
LOC102227077	LOC102217618	ENSXMAP00000015651	ENSXMAP00000032464	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	0.452
LOC102227077	LOC102231467	ENSXMAP00000015651	ENSXMAP00000007783	Uncharacterized protein.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.713