STRINGSTRING
rpap1 rpap1 taf7l taf7l mnat1 mnat1 gtf2h4 gtf2h4 LOC102220032 LOC102220032 polr2d polr2d gtf2f1 gtf2f1 setd2 setd2 supt6h supt6h med18 med18 LOC102219717 LOC102219717 LOC102225599 LOC102225599 tbp tbp polr2b polr2b polr2a polr2a NKX2-8 NKX2-8 polr2c polr2c edn1 edn1 eloa eloa LOC102224043 LOC102224043 ssu72 ssu72 taf11 taf11 taf3 taf3 tcea1 tcea1 LOC102220983 LOC102220983 taf10 taf10 LOC102221048 LOC102221048 M4AYN2_XIPMA M4AYN2_XIPMA taf13 taf13 LOC102227508 LOC102227508 Nfil3 Nfil3 LOC111609769 LOC111609769 M4AZX8_XIPMA M4AZX8_XIPMA LOC106699909 LOC106699909 C5AR1 C5AR1 ell2 ell2 LOC102227724 LOC102227724 LOC102231606 LOC102231606 ccnh ccnh LOC102225323 LOC102225323 ELOB ELOB SRF SRF phrf1 phrf1 Sqstm1 Sqstm1 ash1l ash1l ENSXMAP00000022635 ENSXMAP00000022635 LOC102226748 LOC102226748 GATA2 GATA2 LOC106700042 LOC106700042 scaf1 scaf1 LOC102233609 LOC102233609 rbmx rbmx etv1 etv1 LOC111608154 LOC111608154 med1 med1 LOC102220925 LOC102220925 TAF4 TAF4 msx1 msx1 LOC102236443 LOC102236443 nfatc4 nfatc4 ctr9 ctr9 LOC102226161 LOC102226161 nfat5 nfat5 LOC102233668 LOC102233668 plac8 plac8 gtf2b gtf2b taf2 taf2 ablim3 ablim3 LOC102221305 LOC102221305 rb1 rb1 SMAD4 SMAD4 ddx21 ddx21 ENSXMAP00000031638 ENSXMAP00000031638 ENSXMAP00000032417 ENSXMAP00000032417 ENSXMAP00000032422 ENSXMAP00000032422 ENSXMAP00000032983 ENSXMAP00000032983 nfatc2 nfatc2 ENSXMAP00000033177 ENSXMAP00000033177 LOC102236995 LOC102236995 ercc2 ercc2 LOC102235646 LOC102235646 CYTL1 CYTL1 NKX2-3 NKX2-3 LOC102229912 LOC102229912 ar ar ENSXMAP00000035630 ENSXMAP00000035630 LOC102234301 LOC102234301 gtf2ird1 gtf2ird1 taf12 taf12 ehf ehf ELOF1 ELOF1 gtf2a1 gtf2a1 tnfrsf1a tnfrsf1a polr2i polr2i gtf2e1 gtf2e1 POLR2E POLR2E LOC102223432 LOC102223432 LOC102217136 LOC102217136 ENSXMAP00000039447 ENSXMAP00000039447 ccdc124 ccdc124 LOC102235616 LOC102235616 gtf2h3 gtf2h3 fndc10 fndc10 nkx2-3 nkx2-3 supt3h supt3h LOC102229057 LOC102229057 snapc2 snapc2 atxn1l atxn1l ENSXMAP00000041834 ENSXMAP00000041834 supt16h supt16h taf8 taf8 nr1h4 nr1h4 polr2f polr2f gtf2f2 gtf2f2 leo1 leo1 wdr61 wdr61 LOC102216482 LOC102216482 xbp1 xbp1 LOC102237620 LOC102237620 gcm2 gcm2 LOC102217502 LOC102217502 LOC102223598 LOC102223598 dr1 dr1 gtf2h5 gtf2h5 ice2 ice2 snapc5 snapc5 LOC102218810 LOC102218810 ercc3 ercc3 polr2k polr2k LOC102235592 LOC102235592 gtf2h1 gtf2h1 paf1 paf1 supt5h supt5h prdm4 prdm4 tbpl1 tbpl1 cdc73 cdc73 arid4a arid4a LOC102228719 LOC102228719 LOC102235545 LOC102235545 LOC102220089 LOC102220089 myocd myocd lhx1 lhx1 polr2h polr2h pcid2 pcid2 LOC102222784 LOC102222784 LOC102222224 LOC102222224 rtf1 rtf1 pcf11 pcf11 eny2 eny2 polr2l polr2l taf6l taf6l LOC102237636 LOC102237636 cdk13 cdk13 cdk12 cdk12 Atrx Atrx LOC102218731 LOC102218731 LOC102229789 LOC102229789 LOC102238265 LOC102238265 hltf hltf LOC102226082 LOC102226082 LOC102233582 LOC102233582 d2hgdh d2hgdh polr2g polr2g snapc3 snapc3 nkx2-5 nkx2-5 fam76b fam76b drap1 drap1 LOC102233674 LOC102233674 taf6 taf6 gtf2e2 gtf2e2 polr2j polr2j tmem240 tmem240 M4AE11_XIPMA M4AE11_XIPMA ell ell gsx1 gsx1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpap1RNA polymerase II associated protein 1. (1390 aa)
taf7lTAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
mnat1MNAT1 component of CDK activating kinase. (291 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (464 aa)
LOC102220032Zgc:154006. (554 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (104 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (497 aa)
setd2SET domain containing 2, histone lysine methyltransferase. (2580 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1610 aa)
med18Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (209 aa)
LOC102219717Ash1 (absent, small, or homeotic)-like (Drosophila). (2933 aa)
LOC102225599Protein S100; Belongs to the S-100 family. (100 aa)
tbpTATA box binding protein. (304 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
NKX2-8NK2 homeobox 8. (308 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
edn1Endothelin 1. (197 aa)
eloaElongin A. (639 aa)
LOC102224043TAFH domain-containing protein. (1023 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
taf11TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (208 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (939 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
LOC102220983Small nuclear RNA activating complex, polypeptide 1b. (363 aa)
taf10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
LOC102221048Nuclear factor, interleukin 3 regulated, member 6. (394 aa)
M4AYN2_XIPMABZIP domain-containing protein. (577 aa)
taf13TATA-box binding protein associated factor 13. (125 aa)
LOC102227508CCAAT enhancer binding protein beta. (287 aa)
Nfil3Nuclear factor, interleukin 3 regulated. (429 aa)
LOC111609769Nuclear factor, interleukin 3 regulated, member 4. (245 aa)
M4AZX8_XIPMAUncharacterized protein. (357 aa)
LOC106699909Zinc finger and BTB domain containing 1. (703 aa)
C5AR1Complement C5a receptor 1. (352 aa)
ell2Elongation factor, RNA polymerase II, 2. (672 aa)
LOC102227724CBFD_NFYB_HMF domain-containing protein. (160 aa)
LOC102231606General transcription factor IIA, 1-like. (434 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
LOC102225323Mothers against decapentaplegic homolog. (563 aa)
ELOBElongin B. (126 aa)
SRFSerum response factor. (597 aa)
phrf1PHD and ring finger domains 1. (1729 aa)
Sqstm1Uncharacterized protein. (96 aa)
ash1lUncharacterized protein. (1972 aa)
ENSXMAP00000022635Uncharacterized protein. (129 aa)
LOC102226748Transcription elongation factor A (SII), 2. (386 aa)
GATA2GATA binding protein 2. (466 aa)
LOC106700042Elongin A, like. (658 aa)
scaf1SR-related CTD-associated factor 1. (1362 aa)
LOC102233609Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (68 aa)
rbmxRNA binding motif protein X-linked. (383 aa)
etv1Ets variant 1. (434 aa)
LOC111608154Si:dkey-29b11.3. (82 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1745 aa)
LOC102220925TAFH domain-containing protein. (919 aa)
TAF4TATA-box binding protein associated factor 4. (853 aa)
msx1Muscle segment homeobox 1a. (281 aa)
LOC102236443ETS domain-containing protein. (492 aa)
nfatc4Nuclear factor of activated T cells 4. (842 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1161 aa)
LOC102226161Uncharacterized protein. (203 aa)
nfat5Nuclear factor of activated T cells 5b. (1335 aa)
LOC102233668Actin binding LIM protein family member 3. (604 aa)
plac8Placenta associated 8, tandem duplicate 1. (104 aa)
gtf2bGeneral transcription factor IIB. (318 aa)
taf2TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1221 aa)
ablim3Actin binding LIM protein family, member 3. (695 aa)
LOC102221305GATA binding protein 1a. (438 aa)
rb1Retinoblastoma susceptibility protein. (912 aa)
SMAD4Mothers against decapentaplegic homolog. (512 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (745 aa)
ENSXMAP00000031638General transcription factor IIA, 2. (71 aa)
ENSXMAP00000032417Uncharacterized protein. (158 aa)
ENSXMAP00000032422HTH myb-type domain-containing protein. (78 aa)
ENSXMAP00000032983Uncharacterized protein. (124 aa)
nfatc2Nuclear factor of activated T cells 2a. (891 aa)
ENSXMAP00000033177ELL domain-containing protein. (166 aa)
LOC102236995Transcription elongation factor A (SII), 3. (714 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
LOC102235646GATA binding protein 2a. (459 aa)
CYTL1Cytokine like 1. (146 aa)
NKX2-3NK2 homeobox 3. (364 aa)
LOC102229912MADS-box domain-containing protein. (469 aa)
arAndrogen receptor. (754 aa)
ENSXMAP00000035630Muscle segment homeobox 3. (147 aa)
LOC102234301Elongin B. (119 aa)
gtf2ird1GTF2I repeat domain containing 1. (1021 aa)
taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (174 aa)
ehfEts homologous factor. (274 aa)
ELOF1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
gtf2a1General transcription factor IIA, 1. (391 aa)
tnfrsf1aTumor necrosis factor receptor superfamily, member 1a. (365 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
gtf2e1General transcription factor IIE, polypeptide 1, alpha. (447 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC102223432Uncharacterized protein. (309 aa)
LOC102217136General transcription factor IIH subunit. (392 aa)
ENSXMAP00000039447Uncharacterized protein. (278 aa)
ccdc124Coiled-coil domain containing 124. (220 aa)
LOC102235616Actin binding Rho activating protein b. (403 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (312 aa)
fndc10Fibronectin type III domain containing 10. (179 aa)
nkx2-3NK2 homeobox 3. (349 aa)
supt3hSPT3 homolog, SAGA and STAGA complex component. (357 aa)
LOC102229057BZIP domain-containing protein. (319 aa)
snapc2Uncharacterized protein. (463 aa)
atxn1lAtaxin 1-like. (822 aa)
ENSXMAP00000041834PRY domain-containing protein. (541 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1029 aa)
taf8TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (306 aa)
nr1h4Nuclear receptor subfamily 1, group H, member 4. (485 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (252 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (632 aa)
wdr61WD repeat domain 61. (305 aa)
LOC102216482E74-like factor 3 (ets domain transcription factor, epithelial-specific ). (379 aa)
xbp1X-box binding protein 1. (263 aa)
LOC102237620Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (545 aa)
gcm2GCM domain-containing protein. (447 aa)
LOC102217502Si:ch211-13k12.2. (602 aa)
LOC102223598Uncharacterized protein. (685 aa)
dr1Down-regulator of transcription 1. (176 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
ice2Interactor of little elongator complex ELL subunit 2. (921 aa)
snapc5Small nuclear RNA activating complex, polypeptide 5. (119 aa)
LOC102218810General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (260 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
polr2kUncharacterized protein. (69 aa)
LOC102235592E1A binding protein p300 b. (2751 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (531 aa)
supt5hTranscription elongation factor SPT5. (1062 aa)
prdm4PR domain containing 4. (880 aa)
tbpl1TBP-like 1. (187 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
arid4aAT rich interactive domain 4A (RBP1-like). (1344 aa)
LOC102228719Mothers against decapentaplegic homolog. (503 aa)
LOC102235545Nuclear factor, interleukin 3 regulated, member 5. (601 aa)
LOC102220089IGv domain-containing protein. (247 aa)
myocdSAP domain-containing protein. (967 aa)
lhx1LIM homeobox 1a. (407 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
pcid2PCI domain containing 2. (395 aa)
LOC102222784TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (247 aa)
LOC102222224Uncharacterized protein. (370 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (679 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1691 aa)
eny2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (122 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
taf6lTAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
LOC102237636Ets variant 7. (405 aa)
cdk13Cyclin-dependent kinase 13. (1409 aa)
cdk12Cyclin-dependent kinase 12. (1365 aa)
AtrxATRX chromatin remodeler. (1195 aa)
LOC102218731Actin binding Rho activating protein a. (359 aa)
LOC102229789Nuclear factor of activated T cells 5a. (1435 aa)
LOC102238265B30.2/SPRY domain-containing protein. (713 aa)
hltfHelicase-like transcription factor. (962 aa)
LOC102226082E1A binding protein p300 a. (2737 aa)
LOC102233582TATA-box binding protein associated factor 4. (934 aa)
d2hgdhUncharacterized protein. (622 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (181 aa)
snapc3Small nuclear RNA activating complex, polypeptide 3. (380 aa)
nkx2-5NK2 homeobox 5. (319 aa)
fam76bTranscription initiation factor TFIID subunit. (1867 aa)
drap1DR1-associated protein 1 (negative cofactor 2 alpha). (224 aa)
LOC102233674Uncharacterized protein. (1901 aa)
taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
tmem240Transmembrane protein 240a. (175 aa)
M4AE11_XIPMANuclear receptor subfamily 1, group H, member 5. (494 aa)
ellElongation factor RNA polymerase II. (635 aa)
gsx1Homeobox domain-containing protein. (243 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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