(11 nodes) Protein prenylation network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rabggta	Rab geranylgeranyltransferase subunit alpha. (585 aa)
	LOC102218183	Zinc finger RNA binding protein 2. (1030 aa)
	zfr	Zinc finger RNA binding protein. (1067 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (456 aa)
	LOC102232139	acidPPc domain-containing protein. (269 aa)
	fnta	Farnesyltransferase, CAAX box, alpha. (368 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (332 aa)
	pggt1b	Protein geranylgeranyltransferase type I, beta subunit. (367 aa)
	LOC102221052	CHM Rab escort protein. (697 aa)
	rce1	Ras converting CAAX endopeptidase 1a. (312 aa)
	plpp6	Phospholipid phosphatase 6. (283 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102221052	ptar1	ENSXMAP00000029837	ENSXMAP00000018220	CHM Rab escort protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.953
LOC102221052	rabggta	ENSXMAP00000029837	ENSXMAP00000012693	CHM Rab escort protein.	Rab geranylgeranyltransferase subunit alpha.	0.984
LOC102221052	rabggtb	ENSXMAP00000029837	ENSXMAP00000022130	CHM Rab escort protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.962
fnta	pggt1b	ENSXMAP00000019013	ENSXMAP00000024115	Farnesyltransferase, CAAX box, alpha.	Protein geranylgeranyltransferase type I, beta subunit.	0.998
fnta	rabggtb	ENSXMAP00000019013	ENSXMAP00000022130	Farnesyltransferase, CAAX box, alpha.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.577
fnta	rce1	ENSXMAP00000019013	ENSXMAP00000031174	Farnesyltransferase, CAAX box, alpha.	Ras converting CAAX endopeptidase 1a.	0.986
pggt1b	fnta	ENSXMAP00000024115	ENSXMAP00000019013	Protein geranylgeranyltransferase type I, beta subunit.	Farnesyltransferase, CAAX box, alpha.	0.998
pggt1b	rabggta	ENSXMAP00000024115	ENSXMAP00000012693	Protein geranylgeranyltransferase type I, beta subunit.	Rab geranylgeranyltransferase subunit alpha.	0.405
pggt1b	rce1	ENSXMAP00000024115	ENSXMAP00000031174	Protein geranylgeranyltransferase type I, beta subunit.	Ras converting CAAX endopeptidase 1a.	0.560
ptar1	LOC102221052	ENSXMAP00000018220	ENSXMAP00000029837	Protein prenyltransferase alpha subunit repeat containing 1.	CHM Rab escort protein.	0.953
ptar1	rabggtb	ENSXMAP00000018220	ENSXMAP00000022130	Protein prenyltransferase alpha subunit repeat containing 1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.977
rabggta	LOC102221052	ENSXMAP00000012693	ENSXMAP00000029837	Rab geranylgeranyltransferase subunit alpha.	CHM Rab escort protein.	0.984
rabggta	pggt1b	ENSXMAP00000012693	ENSXMAP00000024115	Rab geranylgeranyltransferase subunit alpha.	Protein geranylgeranyltransferase type I, beta subunit.	0.405
rabggta	rabggtb	ENSXMAP00000012693	ENSXMAP00000022130	Rab geranylgeranyltransferase subunit alpha.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.999
rabggtb	LOC102221052	ENSXMAP00000022130	ENSXMAP00000029837	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	CHM Rab escort protein.	0.962
rabggtb	fnta	ENSXMAP00000022130	ENSXMAP00000019013	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Farnesyltransferase, CAAX box, alpha.	0.577
rabggtb	ptar1	ENSXMAP00000022130	ENSXMAP00000018220	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Protein prenyltransferase alpha subunit repeat containing 1.	0.977
rabggtb	rabggta	ENSXMAP00000022130	ENSXMAP00000012693	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Rab geranylgeranyltransferase subunit alpha.	0.999
rce1	fnta	ENSXMAP00000031174	ENSXMAP00000019013	Ras converting CAAX endopeptidase 1a.	Farnesyltransferase, CAAX box, alpha.	0.986
rce1	pggt1b	ENSXMAP00000031174	ENSXMAP00000024115	Ras converting CAAX endopeptidase 1a.	Protein geranylgeranyltransferase type I, beta subunit.	0.560