STRINGSTRING
zfr zfr fnta fnta rabggtb rabggtb LOC102218183 LOC102218183 pggt1b pggt1b LOC102221052 LOC102221052 rabggta rabggta
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
zfrZinc finger RNA binding protein. (1067 aa)
fntaFarnesyltransferase, CAAX box, alpha. (368 aa)
rabggtbGeranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (332 aa)
LOC102218183Zinc finger RNA binding protein 2. (1030 aa)
pggt1bProtein geranylgeranyltransferase type I, beta subunit. (367 aa)
LOC102221052CHM Rab escort protein. (697 aa)
rabggtaRab geranylgeranyltransferase subunit alpha. (585 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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