50 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102224939	RAB5B, member RAS oncogene family. (216 aa)
	rasl12	RAS-like, family 12. (245 aa)
	TMEM19	Transmembrane protein 19. (366 aa)
	M4B0Z3_XIPMA	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (151 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (187 aa)
	RAB9A	RAB9A, member RAS oncogene family. (202 aa)
	M4AYK1_XIPMA	RAB9B, member RAS oncogene family. (206 aa)
	M4AYI0_XIPMA	ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	trim23	Tripartite motif containing 23. (604 aa)
	srp54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	arl2	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	LOC102231216	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family. (212 aa)
	LOC102234551	Uncharacterized protein. (215 aa)
	LOC102236796	Uncharacterized protein. (384 aa)
	M4AF78_XIPMA	RAP2A, member of RAS oncogene family b. (132 aa)
	rab21	RAB21, member RAS oncogene family. (220 aa)
	LOC102217503	DIRAS family, GTP-binding RAS-like 1b. (198 aa)
	M4A0I8_XIPMA	Uncharacterized protein. (295 aa)
	rras2	RAS related 2. (211 aa)
	LOC102223832	Uncharacterized protein. (184 aa)
	LOC102235995	RAP1A, member of RAS oncogene family b. (185 aa)
	rab14	Uncharacterized protein. (215 aa)
	LOC102230034	Uncharacterized protein. (354 aa)
	rab35	RAB35, member RAS oncogene family b. (184 aa)
	LOC102232710	Uncharacterized protein. (218 aa)
	mras	Muscle RAS oncogene homolog. (208 aa)
	LOC102223235	Uncharacterized protein. (354 aa)
	RAB29	RAB29, member RAS oncogene family. (206 aa)
	rab12	RAB12, member RAS oncogene family. (244 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC102226994	Uncharacterized protein. (185 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	LOC102221989	RAB5A, member RAS oncogene family, a. (216 aa)
	rerg	RAS like estrogen regulated growth inhibitor. (200 aa)
	rragc	Ras-related GTP binding Ca. (382 aa)
	rab28	Uncharacterized protein. (277 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	rap2c	RAP2C, member of RAS oncogene family. (183 aa)
	LOC102226755	Si:dkey-16l2.16. (209 aa)
	LOC102232228	V-ral simian leukemia viral oncogene homolog Ba (ras related). (207 aa)
	LOC102231109	Uncharacterized protein. (223 aa)
	LOC102236106	Uncharacterized protein. (312 aa)
	LOC102226857	RAS related. (197 aa)
	LOC102233132	RAB5A, member RAS oncogene family, b. (216 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	LOC102217498	Uncharacterized protein. (199 aa)
	LOC102217774	Uncharacterized protein. (237 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	LOC102229808	RAB27B, member RAS oncogene family. (218 aa)
	LOC102226410	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102217774	rab28	ENSXMAP00000038038	ENSXMAP00000030416	Uncharacterized protein.	Uncharacterized protein.	0.448
LOC102221989	LOC102223235	ENSXMAP00000028154	ENSXMAP00000024053	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.416
LOC102221989	LOC102230034	ENSXMAP00000028154	ENSXMAP00000004758	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.469
LOC102221989	LOC102234551	ENSXMAP00000028154	ENSXMAP00000015108	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.500
LOC102221989	M4A0I8_XIPMA	ENSXMAP00000028154	ENSXMAP00000007982	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.517
LOC102221989	M4AYK1_XIPMA	ENSXMAP00000028154	ENSXMAP00000019546	RAB5A, member RAS oncogene family, a.	RAB9B, member RAS oncogene family.	0.511
LOC102221989	RAB9A	ENSXMAP00000028154	ENSXMAP00000019617	RAB5A, member RAS oncogene family, a.	RAB9A, member RAS oncogene family.	0.512
LOC102221989	rab14	ENSXMAP00000028154	ENSXMAP00000005319	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.500
LOC102221989	rab21	ENSXMAP00000028154	ENSXMAP00000010439	RAB5A, member RAS oncogene family, a.	RAB21, member RAS oncogene family.	0.404
LOC102223235	LOC102221989	ENSXMAP00000024053	ENSXMAP00000028154	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.416
LOC102223832	LOC102226410	ENSXMAP00000006551	ENSXMAP00000022050	Uncharacterized protein.	V-ral simian leukemia viral oncogene homolog Aa (ras related).	0.431
LOC102223832	LOC102226994	ENSXMAP00000006551	ENSXMAP00000026714	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC102223832	LOC102232228	ENSXMAP00000006551	ENSXMAP00000032996	Uncharacterized protein.	V-ral simian leukemia viral oncogene homolog Ba (ras related).	0.433
LOC102223832	LOC102235995	ENSXMAP00000006551	ENSXMAP00000006006	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC102223832	LOC102236106	ENSXMAP00000006551	ENSXMAP00000036282	Uncharacterized protein.	Uncharacterized protein.	0.436
LOC102224939	LOC102234551	ENSXMAP00000041232	ENSXMAP00000015108	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.499
LOC102224939	M4A0I8_XIPMA	ENSXMAP00000041232	ENSXMAP00000007982	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.511
LOC102224939	M4AYK1_XIPMA	ENSXMAP00000041232	ENSXMAP00000019546	RAB5B, member RAS oncogene family.	RAB9B, member RAS oncogene family.	0.510
LOC102224939	RAB9A	ENSXMAP00000041232	ENSXMAP00000019617	RAB5B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.510
LOC102224939	rab14	ENSXMAP00000041232	ENSXMAP00000005319	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.499